Entry Detail



General Information

Database ID:TRD04061
Confidence:High
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-5009a
tsRNA Type:tRF-5
Amino acid and Anticodon:ValCAC
Sequence:GCTTCTGTAGTGTAG
Related Target:MTOR
Predicted Target:CENPF//EEA1//SLC16A7//OLIG2//SLC25A22//ESRP1//ZNF275//RABEP1//KIF16B//BARD1
External Links:
MINTbase ID:N/A
tRFdb ID:tRFdb-5009a



tsRNA Association Statistics

Total Associated Disease Number:4
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D010003DOID:8398
Disease Name:Osteoarthritisosteoarthritis
Category:MeSHDisease Ontology
Type:Musculoskeletal Diseases//Musculoskeletal Diseasesdisease of anatomical entity
Define:A progressive, degenerative joint disease, the most common form of arthritis, especially in older persons. The disease is thought to result not from the aging process but from biochemical changes and biomechanical stresses affecting articular cartilage. In the foreign literature it is often called osteoarthrosis deformans.An arthritis that has_material_basis_in worn out cartilage located_in joint.
Alias:Arthritis, Degenerative//Arthroses//Arthrosis//Osteoarthrosis//Osteoarthrosis Deformansdegenerative arthritis//degenerative joint disease//hypertrophic arthritis//Osteoarthrosis and allied disorder//osteoarthrosis



Disease Association Statistics

Total Associated tsRNA Number:87
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:RT-PCR
Weak Evidence:High-throughput sequencing



Reference

[1] PubMed ID:36035226
Disease Name:Osteoarthritis
Tissue:Osteoarthritis
Dysfunction Pattern:Up-Regulation
Validated Method:RT-PCR//High-throughput sequencing
Description:tRNA-Derived Fragment tRF-5009A Regulates Autophagy and Degeneration of Cartilage in Osteoarthritis via Targeting mTOR.
Comparision:Autophagy VS Cartilage Degeneration in OA
Mechanism:We Explored The Role Of Trf-5009A In The Posttranscriptional Gene Regulation Of Autophagy And Cartilage Degeneration In Oa. Using Rna Sequencing, We Identified Trf-5009A, The Trnavalcac-Derived Fragment, In Oa Tissues And Explored Its Expression By Quantitative Reverse Transcription Pcr And Fluorescence In Situ Hybridization. We Further Investigated The Relationship Between The Expression Of Trf-5009A And Clinical Factors In Oa. Chondrocytes Were Transfected With A Trf-5009A Inhibitor Or Mimic To Determine Their Functions, Including In Relation To Autophagy And The Cartilage Phenotype. A Rescue Experiment And Dual-Luciferase Reporter Assay Were Conducted To Determine Whether The 3'-Untranslated Region (Utr) Of Mtor Contains A Trf-5009A-Binding Site. Trf-5009A Was Downregulated In The Cartilage Of Oa Knees, Especially In Damaged Areas. Mtor Was Highly Expressed In Damaged Cartilage And Negatively Correlated With The Expression Of Trf-5009A; Transfection With A Trf-5009A Inhibitor Promoted The Expression Of Mtor And Suppressed Autophagy, Whereas Transfection With A Trf-5009A Mimic Had The Opposite Effect. A Dual-Luciferase Reporter Assay Showed That Trf-5009A Silenced The Expression Of Mtor By Binding To Its 3'-Utr. Thus, Trf-5009A Regulates Autophagy And Cartilage Degeneration In Oa By Targeting Mtor. In Summary, These Findings Provide An Additional Tool For The Clinical Diagnosis And Novel Targeted Therapy Of Oa.