Associated tsRNAs in Triple Negative Breast Neoplasms

tsRNA_NametsRNA_TypeAnticodonSequenceTarget_Gene
tRF-20-S998LO9DtRF-5ArgTCTGTCTCTGTGGCGCAATGGACGABRB3//ACVR2B//ALDH7A1//HES7//FBH1//PXYLP1//EFCAB5//SEPTIN1//VSIG10L2//TBC1D5
tRF-31-PER8YP9LON4VD5'-tiRNAGluTTCGCAATGGTGGTTCAGTGGTAGAATTCTCGCCABLIM2//C8orf82//PTCD3//DPF1//SAMHD1//LPAR1//SLC26A6//C9orf129//KPNA6//PLA2R1
SHOT-RNA5'-tiRNAGlyGCCN/AN/A
tRF-30-PNR8YP9LON4V5'-tiRNAGlyGCCGCATTGGTGGTTCAGTGGTAGAATTCTCGCFCGR2A//ZG16B//ANAPC2//LPAR1//CLIP1//ZNF592//C9orf129//DPF1//ACAN//PLA2R1
tRF-32-P4R8YP9LON4V35'-tiRNAGlyGCCGCATGGGTGGTTCAGTGGTAGAATTCTCGCCTFCGR2A//B4GALNT4//LPAR1//AATK//DPF1//ZNFX1//NLGN3//EIF3G//NDUFAF1//WDFY4
tRF-33-P4R8YP9LON4VDP5'-tiRNAGlyGCCGCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGFCGR2A//B4GALNT4//ZNF513//CNTLN//TGIF2LX//TGIF2LY//DPF1//LPAR1//AATK//F2RL2
tRF-34-XSXMSL73VL4YHE5'-tiRNAHisGTGTGCCGTGATCGTATAGTGGTTAGTACTCTGCGTTSHF//EVPLL//SUSD5//MFGE8//ZNF497//AC010422.3//MAN2B1//SHANK2//ARHGAP25//DDB1
tiRNA-Lys-CTT-0015'-tiRNALysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCCNFKBID//EBI3//RPS6KA2//JPH1//WDR54//MOB2//GULP1//SEC61A1//PES1//PLXNA1
tiRNA-Lys-CTT-0025'-tiRNALysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCEBI3//NFKBID//CHTF18//JPH1//TNFRSF11A//PES1//MGAT1//POM121C//ALG14//STX18
tRF-33-PSQP4PW3FJI0V5'-tiRNALysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCNFKBID//EBI3//RPS6KA2//JPH1//PES1//POM121C//MGAT1//ALG14//STX18//POMZP3
tRF-33-PSQP4PW3FJI0W5'-tiRNALysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTEBI3//NFKBID//JPH1//PES1//MGAT1//POM121C//STX18//POMZP3//CFAP410//ALG14
tiRNA-Lys-TTT-0025'-tiRNALysTTTGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTEBI3//URM1//SEC24C//ARHGEF19//CD3D//TNFRSF11A//ALDOC//MMP21//NDUFA8//PFKP
tiRNA-Val-CAC-0015'-tiRNAValCACGCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTCZBED2//ERAP1//PTPN14//OBSCN//NPTXR//CLASRP//NR1H3//AGRN//HK2//CDC25C
tRF-32-Q99P9P9NH57SJ5'-tiRNAValCACGCTTCTGTAGTGTAGTGGTTATCACGTTCGCCSREBF2//ZBED2//PTPN14//ERAP1//CLASRP//NPTXR//CASZ1//HK2//YAF2//PELP1
tRF-33-Q99P9P9NH57SD35'-tiRNAValCACGCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTZBED2//ERAP1//NPTXR//CLASRP//OBSCN//HK2//NR1H3//HJURP//AGRN//EPB41L3
tRF-31-PIR8YP9LON4VD5'-tiRNAValCAC;GlyCCCGCACTGGTGGTTCAGTGGTAGAATTCTCGCCLPAR1//ST3GAL2//ABLIM2//ERAS//C8orf82//ANAPC2//ZNF592//ZG16B//TTLL7//NTMT1
tRF-20-40KK5Y93i-tRFArgCCTCTAAGCCAGGGATTGTGGGTARNT2//RAB37//RIMS3//ERGIC1//GMPPA//MYO1G//ACSS1//TCP11L1//C10orf82//FLNA
ts-46tRF-1HisGTGTTGTGGAAACAATGGTACGGCAAGGGCCTCTTTENAM//PREX1//ARV1//C17orf53//GAS2L1//VPS18//MVP//MDN1//TF//PORCN
tRF-1001tRF-1SerTGAGAAGCGGGTGCTCTTATTTGOLGA7B//CDK2AP2//ARHGAP20//ASS1//NOTCH3//UBE2L3//UBE2L5//ANO9//COG5//SYT8
3'tRF-CAT1tRF-3AlaAGCTCCCCAGTACCTCCACCASEC14L1//RIC3//GNPTAB//RETREG3//C6orf223//SNX33//KLF14//COLGALT1//PDE6C//SEMA3G
AS-tDR-000100tRF-3AlaAGCN/AN/A
AS-tDR-000102tRF-3AlaCGCN/AN/A
tRF-Gln-CTG-005tRF-3GlnCTGTCTCGGTGGAACCTCCAST3GAL4//TOR3A//FNDC11//FNBP1//DCAKD//ORC1//CRTAP//SYNE2//FHAD1//TP53BP2
i-tRFle-AAT-019tRF-3IleAATTCCCCGTACGGGCCACCARNF39//HCLS1//LPCAT3//COL9A3//PRRC2B//NUTM2D//ALKAL2//DOK2//HLA-C//DNAH1
tRF-Leu-CAA-006tRF-3LeuCAATCCCACTTCTGACACCAACSBG1//ALDH1L1//ZC3H7B//FBXL19//ESRRA//NGB//PLN//INTS9//RBM43//ATN1
tRF-Leu-CAG-002tRF-3LeuCAGATCCCACTCCTGACACCALRRC8E//PLN//C12orf45//HERC3//C6orf89//CHST10//EML1//TADA2A//DTWD1//FGF13
tRF-Phe-GAA-001tRF-3PheGAATATATACCCGGGTTTCGGCACCANFATC3//NFE4//PKN3//LRP10//CSMD2//PHF20//TUBA4A//HAGHL//TNFSF12-TNFSF13//TNFSF13
tRF-Tyr-GTA-010tRF-3TyrGTAATCCGGCTCGAAGGACCAKLHDC4//GAD2//CHST3//CHD2//TMEM41A//CCDC106//NRROS//DUS2//IPO13//FAM135B
AS-tDR-005700tRF-3ValCACN/AN/A
tRF/miR-1280tRF-3N/AAGGGTGGCGACGGTEGLN2//DMRT3//PHETA1//AGO3//GARS//EVI5L//NRF1//MRPL2//TSC22D2//CAV1
tRF-Ala-AGC-047tRF-5AlaAGCGGGGGTGTAGCTCAGTENAH//PIK3R2//MFSD2B//PRKDC//GPR84//DUSP10//SLC4A11//RHOD//CDK10//TRIM10
tRF-Gln-CTG-003tRF-5GlnCTGGGTTCCATGGTGTAATGGTTAGCACTCTGGNEFL//RASSF8//PDGFRB//FAM92B//NOP16//ATP13A2//TEX37//C10orf67//C19orf85//EIF4ENIF1
tRF-Glu-CTC-003tRF-5GluCTCTCCCTGGTGGTCTAGTSLC39A13//TFCP2L1//SMAD3//COL6A6//DAB2IP//NDOR1//QSER1//CC2D2A//MUC4//RP1
tRF-Glu-TTC-024tRF-5GluTTCTCCCTGGTGGTCTAGTGGCTAGGATTCGGCGSLC25A6//ESPL1//TFCP2L1//GALNT11//CLEC14A//NPY4R//NPY4R2//MYOZ1//UBE2J2//TRIM6-TRIM34
tRF-Gly-CCC-007tRF-5GlyCCCGCATTGGTGGTTCAGTGGTAGAFCGR2A//PRELP//OR7C1//MUCL1//MRRF//PEG10//HSD17B4//OLFM3//DGKH//FAM149B1
tRF-Gly-CCC-009tRF-5GlyCCCGCATTGGTGGTTCAGTGGTAGAATFCGR2A//OLFM3//OR7C1//MUCL1//PCGF5//HSD17B4//MRRF//PEG10//FAM149B1//SH3GLB1
tRF-30-PNR8YP9LON4VtRF-5GlyCCC;GlyGCCGCATTGGTGGTTCAGTGGTAGAATTCTCGCFCGR2A//ZG16B//ANAPC2//LPAR1//CLIP1//ZNF592//C9orf129//DPF1//ACAN//PLA2R1
5'-tRF-GlyGCC-ntRF-5GlyGCCN/AN/A
tRF-23-XSXMSL730HtRF-5HisGTGTGCCGTGATCGTATAGTGGTTAGSHF//SFTA3//PLD1//SUSD5//SLCO2B1//CARS//HMBOX1//FKTN//CHST9//LAMA2
tRF-24-FSXMSL732ZtRF-5HisGTGAGCCGTGATCGTATAGTGGTTAGTSHF//MUC5B//SFTA3//RGS21//CARS//DUSP10//LAMA2//FKTN//SUSD5//SLC22A23
tRF-24-XSXMSL732ZtRF-5HisGTGTGCCGTGATCGTATAGTGGTTAGTSHF//MUC5B//SFTA3//FKTN//SUSD5//PLD1//SLC22A23//CARS//DUSP10//RGS21
tRF-31-PW5SVP9N15WV0tRF-5HisGTGGCCGTGATCGTATAGTGGTTAGTACTCTGCGSHF//ARHGAP25//EVPLL//SUSD5//OTUB2//RBMXL2//LHFPL6//FOXC1//PTPRN//ELK4
tRF-32-XSXMSL73VL4YKtRF-5HisGTGTGCCGTGATCGTATAGTGGTTAGTACTCTGCGSHF//SUSD5//ARHGAP25//EVPLL//OTUB2//LHFPL6//RBMXL2//ELK4//PTPRN//ATF7IP2
tRF-iMet-CAT-003tRF-5iMetCATAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCSIRPB1//LHX6//TBC1D5//SRPX//IFIH1//ZNF786//ADAM15//RNF183//TMEM255B//CACNG8
tRF-Leu-AAG-002tRF-5LeuAAGGGTAGCGTGGCCGAGMRPS2//SLC39A8//PTBP1//TP73//DIP2B//HAPLN2//TRIL//RNF139//RUNX1//TM9SF1
AS-tDR-000882tRF-5LysCTTN/AN/A
tRF-28-PSQP4PW3FJD0tRF-5LysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGEBI3//RPS6KA2//RPS6KA1//RHOD//PIK3CD//ACAN//FBXL12//PRPF40B//B3GNT4//NMT1
tRF-Lys-CTT-007tRF-5LysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGARPS6KA2//PES1//POM121C//CFAP410//POMZP3//STX18//ALG14//DDR1//PIK3CD//INTS6
tRF-Lys-CTT-008tRF-5LysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACEBI3//RPS6KA2//NFKBID//PES1//POM121C//STX18//CFAP410//ALG14//POMZP3//INTS6
tRF-Lys-CTT-011tRF-5LysCTTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACEBI3//ZDHHC3//ZBTB17//GPER1//SMOC2//GNA14//RPS6KA2//TNRC18//CFAP410//WDR54
tRF-Pro-AGG-006tRF-5ProAGGGGCTCGTTGGTCTAGGGGTATGATTCTCGCTTKCNJ4//STAB2//NOMO2//NOMO3//BLMH//HMGN2//KEAP1//LEMD3//PRDM7//NOG
tRF-Ser-AGA-002tRF-5SerAGAGTAGTCGTGGCCGAADAT3//ZFAND3//POLI//CTBP2//LTBP2//SOX1//COL1A2//ARAP1//POLD1//ZNF276
AS-tDR-001130tRF-5ValCACN/AN/A
tRF-Gln-CTG-001N/AGlnCTGN/AN/A
tRF-Gly-CCC-041N/AGlyCCCN/AN/A
tRF-Ile-AAT-019N/AIleAATN/AN/A
tDR-000620N/AN/AN/AN/A
tDR-0009N/AN/AN/AN/A
tDR-7336N/AN/AN/AN/A
tRF-1001N/AN/AN/AN/A
tRF-33-P4R8YP9LON4VDPN/AN/AGCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGFCGR2A//B4GALNT4//ZNF513//CNTLN//TGIF2LX//TGIF2LY//DPF1//LPAR1//AATK//F2RL2