tsRNADisease

Associated tsRNAs in Oral Submucous Fibrosis

tsRNA_Name	tsRNA_Type	Anticodon	Sequence	Target_Gene
tiRNA-Thr-TGT-001	3'-tiRNA	ThrTGT	GTAAACCGGAGACGAAAACCTTTTTCCAAGGACACCA	MYOCOS//LRP5L//MUC6//IGSF9B//GRIK4//TYW5//ST5//STXBP6//PEG3//GOLGA3
tiRNA-Gly-TCC-002	5'-tiRNA	GlyTCC	GCGTTGGTGGTATAGTGGTTAGCATAGCTGCCTT	PHGDH//UHMK1//RPS6KA4//SYNPO2L//CD40//INPP5K//SUPT6H//MYO1D//FAM205A//MDM2
tiRNA-Pro-TGG-002	5'-tiRNA	ProTGG	GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTT	KCNJ4//STAB2//HMGN2//NOMO2//NOMO3//KEAP1//BLMH//MAGIX//TRMT5//LEMD3
tiRNA-SeC-TCA-001	5'-tiRNA	SecTCA	GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTT	C7//KLK7//MEGF8//PSMD11//BIRC5//DRG2//ACAP1//ENY2//CLN3//SLC6A7
tiRNA-Ser-GCT-001	5'-tiRNA	SerGCT	AAGAAAGATTGCAAGAACTG	AP1G1//MESP1//TBK1//YME1L1//OR11H4//PHTF2//CNBD1//PSMD9//GPR180//TAPT1
tiRNA-Val-AAC-001	5'-tiRNA	ValAAC	GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTA	CTNND2//ZBED2//CDYL2//HK2//KIAA1549//SLC12A5//UNC5A//STK36//TRIM29//GPC6
tiRNA-Val-CAC-001	5'-tiRNA	ValCAC	GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTC	ZBED2//ERAP1//PTPN14//OBSCN//NPTXR//CLASRP//NR1H3//AGRN//HK2//CDC25C
tiRNA-Val-CAC-002	5'-tiRNA	ValCAC	GTTTCCGTAGTGTAGCGGTTATCACATTCGCCTC	PLEKHG5//CDYL2//KLK10//GPC6//GALNTL6//ILRUN//SOCS2//SNX1//TRERF1//CIAO3
tRF-Arg-ACG-017	tRF-1	ArgACG	N/A	N/A
tRF-Asn-GTT-054	tRF-1	AsnGTT	N/A	N/A
tRF-Cys-GCA-025	tRF-1	CysGCA	N/A	N/A
tRF-Gln-TTG-041	tRF-1	GlnTTG	N/A	N/A
tRF-Gln-TTG-042	tRF-1	GlnTTG	N/A	N/A
tRF-Glu-TTC-003	tRF-1	GluTTC	N/A	N/A
tRF-Glu-TTC-033	tRF-1	GluTTC	N/A	N/A
tRF-Glu-TTC-035	tRF-1	GluTTC	N/A	N/A
tRF-Glu-TTC-040	tRF-1	GluTTC	N/A	N/A
tRF-Leu-AAG-006	tRF-1	LeuAAG	GTTTGTGGTAGTTTT	PPP1R12B//TLK1//PLD5//S100A7//EEF2K//PRKD2//S100A7A//RCL1//GTF2A1//CLSPN
tRF-Leu-AAG-045	tRF-1	LeuAAG	N/A	N/A
tRF-Leu-CAG-007	tRF-1	LeuCAG	ATATGTGTTTTCCGTCCTTACTTTT	PTPRG//ADGRL4//ENC1//PITPNA//RMDN3//SMARCB1//SLC8A3//CASC3//PHIP//BCL2L11
tRF-Phe-GAA-006	tRF-1	PheGAA	N/A	N/A
tRF-Ser-TGA-028	tRF-1	SerTGA	N/A	N/A
tRF-Thr-AGT-016	tRF-1	ThrAGT	N/A	N/A
tRF-Trp-CCA-006	tRF-1	TrpCCA	N/A	N/A
tRF-Trp-CCA-007	tRF-1	TrpCCA	N/A	N/A
tRF-Val-AAC-022	tRF-1	ValAAC	N/A	N/A
tRF-Glu-CTC-014	tRF-2	GluCTC	GCGCTCTCACCGCC	CD3EAP//BCS1L//CCNYL1//SPRTN//TOX4//PCOLCE2//PDGFD//POGK//CFL1//ZNF664
tRF-Leu-TAG-030	tRF-2	LeuTAG	N/A	N/A
tRF-Ser-GCT-014	tRF-2	SerGCT	AGAACTGCTAACTC	NCAM2//WDR72//NLN//TMEM17//LONRF3//PHTF2//KIF14//LRIG3//GFPT1//CTSZ
tRF-Ser-GCT-015	tRF-2	SerGCT	N/A	N/A
tRF-Ser-GCT-016	tRF-2	SerGCT	N/A	N/A
tRF-Ser-GCT-048	tRF-2	SerGCT	N/A	N/A
tRF-Ser-GCT-071	tRF-2	SerGCT	N/A	N/A
tRF-Ala-AGC-001	tRF-3	AlaAGC	N/A	N/A
tRF-Ala-AGC-010	tRF-3	AlaAGC	TCCCCGGCACCTCCACCA	SEC14L1//RAB43//ISY1-RAB43//FAM171A2//SMTN//RIC3//RETREG3//EGLN3//DCHS1//PLXNB1
tRF-Ala-CGC-008	tRF-3	AlaCGC	N/A	N/A
tRF-Ala-CGC-023	tRF-3	AlaCGC	N/A	N/A
tRF-Arg-TCT-011	tRF-3	ArgTCT	N/A	N/A
tRF-Asn-GTT-005	tRF-3	AsnGTT	N/A	N/A
tRF-Asn-GTT-015	tRF-3	AsnGTT	N/A	N/A
tRF-Cys-GCA-002	tRF-3	CysGCA	ATCCGGGTGCCCCCTCCA	MAN1A1//PDGFC//FAM181B//JAKMIP1//C4orf50//PDZRN3//TSPY2//TSPY1//TSPY8//TSPY4
tRF-Cys-GCA-004	tRF-3	CysGCA	TCCGGGTGCCCCCTCCA	VSX2//MAN1A1//PDGFC//POLR2H//FAM181B//JAKMIP1//C4orf50//PDZRN3//TSPY2//CLIC6
tRF-Cys-GCA-044	tRF-3	CysGCA	N/A	N/A
tRF-Gln-CTG-028	tRF-3	GlnCTG	N/A	N/A
tRF-Gly-CCC-042	tRF-3	GlyCCC	N/A	N/A
tRF-Gly-CCC-043	tRF-3	GlyCCC	TCGATTCCCGGGCGGCGCACCA	WDR55//EME2//HAAO//ABCB8//IGHV5-51//IGHV5-10-1//PAFAH1B3//KCTD1//ARHGAP45//IER3
tRF-Gly-CCC-046	tRF-3	GlyCCC	TATATATTCCCGGGCGGCGC	HAAO//HOMER2//RASSF7//ENTPD2//TRIM58//TET1//MC1R//ZC3H18//ANO7//ICAM5
tRF-Gly-TCC-033	tRF-3	GlyTCC	N/A	N/A
tRF-Leu-TAA-006	tRF-3	LeuTAA	N/A	N/A
tRF-Lys-TTT-014	tRF-3	LysTTT	ACACCTCTTTACAGTGACCA	KLK13//TSPAN14//KNOP1//COPZ1//IQGAP2//EIF2B4//MOB3C//NAV3//EPPIN//UBXN2B
i-tRFMet-CAT-020	tRF-3	MetCAT	N/A	N/A
tRF-Phe-GAA-012	tRF-3	PheGAA	CATCACCCCATAAACACCA	ZNF630//AHNAK//TMEM8B//PKP3//FADS2//MOB3B//MED1//APEH//FBXO3//KRT1
tRF-Phe-GAA-033	tRF-3	PheGAA	N/A	N/A
tRF-Pro-AGG-011	tRF-3	ProAGG	N/A	N/A
tRF-Pro-AGG-024	tRF-3	ProAGG	N/A	N/A
tRF-Pro-TGG-001	tRF-3	ProTGG	CGCGCAAAGACTTTTTCTCTGACCA	SNX29//VCPIP1//SLC22A2//MPRIP//GSDMB//GRWD1//FAIM2//CFTR//CAMSAP2//TSPAN11
tRF-Pro-TGG-002	tRF-3	ProTGG	N/A	N/A
tRF-Pro-TGG-003	tRF-3	ProTGG	AGACTTTTTCTCTGACCA	RPL28//PHEX//TASOR2//TSC22D1//FLG//RNFT1//PRMT2//PRKAG3//MPRIP//PRKD1
tRF-Pro-TGG-009	tRF-3	ProTGG	N/A	N/A
tRF-Pro-TGG-011	tRF-3	ProTGG	TTAAAGACTTTTTCTCTGACCA	RPL28//RNFT1//PHEX//TASOR2//FLG//PRMT2//TSC22D1//VCPIP1//MPRIP//ZNF19
tRF-Pro-TGG-020	tRF-3	ProTGG	N/A	N/A
tRF-Ser-CGA-014	tRF-3	SerCGA	N/A	N/A
tRF-Ser-CGA-015	tRF-3	SerCGA	N/A	N/A
tRF-Ser-TGA-015	tRF-3	SerTGA	ATCCTGTCGGCTACGCCA	CD320//GPSM1//DYRK3//HMCN2//FBXL14//TOR2A//MKS1//GALNT2//FANCC//ST3GAL2
tRF-Ser-TGA-053	tRF-3	SerTGA	N/A	N/A
tRF-Thr-TGT-006	tRF-3	ThrTGT	TTTTTCCAAGGACACCA	CAMTA1//TMEM102//SRRM2//CDC27//FAT4//PHKA2//TRMT13//COL27A1//WIZ//ANKRD33B
tRF-Trp-TCA-005	tRF-3	TrpTCA	ATACTTAATTTCTGCCA	NPIPB6//OR2V1//PPP6R3//NPIPB7//NIPBL//RBM7//SELL//CEP41//AC138894.1//ZMYM5
tRF-Tyr-GTA-001	tRF-3	TyrGTA	N/A	N/A
tRF-Tyr-GTA-004	tRF-3	TyrGTA	N/A	N/A
tRF-Tyr-GTA-011	tRF-3	TyrGTA	ATCCGGCTCGGAGGACCA	CCDC106//STMN3//CLK3//EPN2//C8orf58//TBX1//NMRAL1//RNF32//ADAMTS10//OSCAR
tRF-Tyr-GTA-036	tRF-3	TyrGTA	N/A	N/A
tRF-Val-AAC-003	tRF-3	ValAAC	ACCGGGCGGAAACACCA	STK32A//LTBP3//ITGB3BP//CDYL//SH3BP5L//DNAJC5//LPO//LYPLA1//HNRNPH1//TPD52L2
tRF-Val-CAC-001	tRF-3	ValCAC	CCCGGGCGGAAACACCA	STK32A//CDYL//PIWIL1//ANAPC13//CCDC115//SETD5//ZDHHC18//CLIP2//ITGB3BP//PROM2
tRF-Val-CAC-024	tRF-3	ValCAC	ACCGGGCAGAAGCACCA	MUC6//PCSK5//STK32A//CDC73//MMS19//NFATC3//ERO1A//SFXN3//MGAT1//AFF2
tRF-Val-TAC-002	tRF-3	ValTAC	N/A	N/A
tRF-Val-TAC-019	tRF-3	ValTAC	N/A	N/A
tRF-Val-TAC-021	tRF-3	ValTAC	TTAACTTGACCGCTCTGACCA	SP100//LSM11//EPB42//CAVIN3//PSMG4//NAA30//TMEM237//NADK//COX10//PHB
tRF-Asn-GTT-032	tRF-5	AsnGTT	N/A	N/A
tRF-Gln-TTG-009	tRF-5	GlnTTG	N/A	N/A
tRF-Gln-TTG-010	tRF-5	GlnTTG	N/A	N/A
tRF-Gln-TTG-012	tRF-5	GlnTTG	N/A	N/A
tRF-Glu-CTC-001	tRF-5	GluCTC	TCCCTGGTGGTCTA	MUC4//COL6A6//HS1BP3//COL24A1//KLHL38//DGKQ//COL4A5//ZFPM1//MYO15B//APOBEC3A
tRF-Glu-CTC-002	tRF-5	GluCTC	TCCCTGGTGGTCTAG	COL6A6//TFCP2L1//MUC4//MYO15B//COL24A1//SLC39A13//HS1BP3//KLHL38//APOBEC3A//APOBEC3G
tRF-Glu-CTC-017	tRF-5	GluCTC	TCCCTGGTGGTCTAGTGGTTAGGA	TFCP2L1//CHRNA1//TUBA1B//EME2//QSER1//SLC25A48//ARMCX4//RBM28//EHMT1//INSYN1
tRF-Glu-TTC-013	tRF-5	GluTTC	N/A	N/A
tRF-Glu-TTC-021	tRF-5	GluTTC	TCCCATATGGTCTAGCGGTTAGGATTCCTGGT	CYB561A3//SGMS2//MOB3C//CLEC18A//CLEC18C//CLEC18B//PPP1R26//CCDC24//PAQR4//WSCD2
tRF-Gly-CCC-002	tRF-5	GlyCCC	N/A	N/A
tRF-Gly-CCC-004	tRF-5	GlyCCC	N/A	N/A
tRF-Gly-CCC-012	tRF-5	GlyCCC	N/A	N/A
tRF-Gly-CCC-013	tRF-5	GlyCCC	N/A	N/A
tRF-Gly-CCC-021	tRF-5	GlyCCC	GCGCCGCTGGTGTAGTGGTATCATGCAAGATT	PTPRK//ESPN//PIGA//SSH1//FKBP1A//TMEM207//CLPTM1//ZNF467//MYL3//FAM120A
tRF-Gly-CCC-035	tRF-5	GlyCCC	N/A	N/A
tRF-Gly-GCC-002	tRF-5	GlyGCC	GCATAGGTGGTTCAGTGGTAGAATTCTT	FCGR2A//SP3//NDUFAF1//SMIM3//PRELP//OLFM3//ALOXE3//SNRNP200//C9orf129//AGBL3
tRF-Gly-GCC-004	tRF-5	GlyGCC	N/A	N/A
tRF-Gly-GCC-031	tRF-5	GlyGCC	N/A	N/A
tRF-Gly-GCC-032	tRF-5	GlyGCC	GCATGGGTGGTTCAGT	MFN1//FRYL//MMD2//TOGARAM2//OAS1//NIPSNAP3B//TNFRSF19//C2CD6//DDI1//SLC35C2
tRF-Gly-TCC-007	tRF-5	GlyTCC	GCGTTGGTGGTATAGTGGTGAGC	PHGDH//SPSB1//SLC6A9//ICAM5//ENDOG//CPHXL//ZNF775//MRPL54//CAPSL//SLC34A1
tRF-Gly-TCC-010	tRF-5	GlyTCC	GCGTTGGTGGTATAGTGGTGAGCATAGCTGCC	PHGDH//SUPT6H//SYNPO2L//SPSB1//TMBIM1//FAM205A//RPS6KA4//TMEM184B//CPHXL//FAM92B
tRF-Gly-TCC-016_n1	tRF-5	GlyTCC	CGCGTTGGTGGTATAGTGGTT	SPSB1//PHGDH//TUBGCP3//SARAF//ENDOG//ICAM5//SSPO//FCGR2A//SEC16A//DNAJB5
tRF-Gly-TCC-041	tRF-5	GlyTCC	N/A	N/A
tRF-His-GTG-005	tRF-5	HisGTG	GCCGTGATCGTATAGTGGTTAGTACTCT	SHF//OTUB2//RBMXL2//MUC5B//CXCL16//TEP1//DUSP10//AGAP2//LUZP1//TET2
tRF-His-GTG-008	tRF-5	HisGTG	GCCGTGATCGTATAGTGGTTAGTACTCTGCG	SHF//ARHGAP25//EVPLL//SUSD5//OTUB2//RBMXL2//LHFPL6//FOXC1//PTPRN//ELK4
tRF-His-GTG-009	tRF-5	HisGTG	GCCGTGATCGTATAGTGGTTAGTACTCTGCGT	SHF//EVPLL//ARHGAP25//SHANK2//DDB1//SUSD5//RBMXL2//FOXC1//OTUB2//AC010422.3
i-tRFle-AAT-014	tRF-5	IleAAT	N/A	N/A
tRF-Lys-CTT-002	tRF-5	LysCTT	GCCCGGCTAGCTCAG	SIAH3//PANK4//LMOD1//PTDSS1//TTYH1//PRR14L//SMIM19//FAM167A//MYO15A//UNCX
tRF-Lys-CTT-011	tRF-5	LysCTT	GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC	EBI3//ZDHHC3//ZBTB17//GPER1//SMOC2//GNA14//RPS6KA2//TNRC18//CFAP410//WDR54
tRF-Lys-TTT-003	tRF-5	LysTTT	GCCCGGATAGCTCAG	FAM234B//TSR3//CLEC4G//GLG1//HTR5A//GLDN//ARHGEF4//TCEAL3//TIAM1//STEAP2
tRF-Lys-TTT-007	tRF-5	LysTTT	GCCCGGATAGCTCAGTCGGTAGAGCATC	EBI3//SEC24C//FBN2//GASK1A//RPS6KA1//ARHGEF19//GLG1//ST6GAL1//RHOG//PIK3CD
tRF-Lys-TTT-009	tRF-5	LysTTT	N/A	N/A
tRF-Lys-TTT-011	tRF-5	LysTTT	GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC	EBI3//URM1//RPS6KA1//GLG1//ARHGEF19//SEC24C//MMP21//PROM2//PFKP//GASK1A
tRF-Lys-TTT-024	tRF-5	LysTTT	CACTGTAAAGCTAACT	ANK3//FAM91A1//SNX12//MELTF//HAND2//NCKIPSD//TTLL3//APOB//NDE1//FGF13
tRF-Met-CAT-009	tRF-5	MetCAT	N/A	N/A
tRF-Phe-GAA-022	tRF-5	PheGAA	N/A	N/A
tRF-Pro-AGG-006	tRF-5	ProAGG	GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT	KCNJ4//STAB2//NOMO2//NOMO3//BLMH//HMGN2//KEAP1//LEMD3//PRDM7//NOG
tRF-Pro-TGG-004	tRF-5	ProTGG	N/A	N/A
tRF-Pro-TGG-015	tRF-5	ProTGG	N/A	N/A
tRF-Pro-TGG-016	tRF-5	ProTGG	N/A	N/A
tRF-Pro-TGG-018	tRF-5	ProTGG	N/A	N/A
tRF-Ser-AGA-002	tRF-5	SerAGA	GTAGTCGTGGCCGA	ADAT3//ZFAND3//POLI//CTBP2//LTBP2//SOX1//COL1A2//ARAP1//POLD1//ZNF276
tRF-Ser-AGA-006	tRF-5	SerAGA	N/A	N/A
tRF-Ser-GCT-005	tRF-5	SerGCT	GACGAGGTGGCCGA	CBFA2T3//AP1S2//RAP1GAP//BEST1//MYDGF//GREB1//KIAA0556//EGFR//NLGN2//NME3
tRF-Ser-GCT-030	tRF-5	SerGCT	N/A	N/A
tRF-Ser-GCT-110	tRF-5	SerGCT	N/A	N/A
tRF-Tyr-GTA-015	tRF-5	TyrGTA	CCTTCGATAGCTCAG	TMED3//SOX11//HIF1AN//HAP1//SRPK1//SYT5//LIN28A//ZMAT3//ZNF862//CHMP7
tRF-Val-TAC-005	tRF-5	ValTAC	CAGAGTGTAGCTTAAC	IKZF4//TRO//DNHD1//UHMK1//GRK2//ITLN1//ISG20L2//APCDD1//CD1C//SOCS4
tRF-Val-TAC-010	tRF-5	ValTAC	GGTTCCATAGTGTAG	NEFL//XIRP1//ROS1//CTRC//METTL1//PTPRT//GIPR//CACNA2D1//MMACHC//LRRFIP1
tRF-Gly-GCC-002	N/A	GlyGCC	N/A	N/A
tiRNA-Val-CAC-002	N/A	N/A	N/A	N/A

tsRNADisease v1.0

Associated tsRNAs in Oral Submucous Fibrosis