The tsRNA and Disease Database (version 1.0)
| tsRNA_Name | tsRNA_Type | Anticodon | Sequence | Target_Gene |
|---|---|---|---|---|
| tRF-20-S998LO9D | tRF-5 | ArgTCT | GTCTCTGTGGCGCAATGGAC | GABRB3//ACVR2B//ALDH7A1//HES7//FBH1//PXYLP1//EFCAB5//SEPTIN1//VSIG10L2//TBC1D5 |
| tiRNA-Val-CAC-001 | 5'-tiRNA | ValCAC | GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTC | ZBED2//ERAP1//PTPN14//OBSCN//NPTXR//CLASRP//NR1H3//AGRN//HK2//CDC25C |
| tRF-20-40KK5Y93 | i-tRF | ArgCCT | CTAAGCCAGGGATTGTGGGT | ARNT2//RAB37//RIMS3//ERGIC1//GMPPA//MYO1G//ACSS1//TCP11L1//C10orf82//FLNA |
| tRF-Asn-GTT-010 | i-tRF | AsnGTT | CGGCTGTTAACCGAA | TSPOAP1//GKAP1//SMYD5//CENPC//WDFY4//MAS1//KCNJ14//GBX2//LPP//TRMT9B |
| 3P_tRNA-Arg-ACG-2-3 | tRF-1 | ArgACG | GGTGTTAATCTTGGCTTT | NDST3//PLCL2//IGSF22//SEMA3D//GLRA4//ANKRD50//IP6K1//PTPN2//ADGRV1//ARMCX3 |
| 3P_tRNA-Arg-ACG-2-4 | tRF-1 | ArgACG | CTTGTGCTCTCACTTT | SLC35A5//ST3GAL3//MAP1B//TMEM176B//CLDN5//TNNT2//PCLO//TACC2//ZDHHC11//OSBPL2 |
| 3P_tRNA-Arg-CCG-1-3 | tRF-1 | ArgCCG | TTGCCATGTTAACGTTT | ZNF749//KLHL13//CCDC43//ANKRD9//RFX1//OTUD1//TFDP3//CMC2//KMT5B//PLGLB1 |
| tRF-+1:T14-Arg-CCT-4 | tRF-1 | ArgCCT | N/A | N/A |
| tRF-Arg-CCT-018 | tRF-1 | ArgCCT | N/A | N/A |
| 3P_tRNA-Arg-TCG-1-1 | tRF-1 | ArgTCG | AAGGGAGGTTATGATTAACTTT | ADAMTS12//HNRNPU//CTDSP2//ABCA4//DTNA//DGAT2L6//SLC25A1//KLHL7//CYYR1//AFAP1L1 |
| ts-47 | tRF-1 | ArgTCG | AAGGGAGGTTATGATTAACTTT | ADAMTS12//HNRNPU//CTDSP2//ABCA4//DTNA//DGAT2L6//SLC25A1//KLHL7//CYYR1//AFAP1L1 |
| 3P_tRNA-Arg-TCT-4-1 | tRF-1 | ArgTCT | GTCACCTGGCAGGTGCCTCTTT | SH3KBP1//CCDC125//FBN3//COL4A1//ZNF805//RDH10//TTYH3//ARTN//CADPS2//VGLL4 |
| tRF-+1:T31-Gly-CCC-1-2 | tRF-1 | GlyCCC | N/A | N/A |
| 3P_tRNA-His-GTG-1-8 | tRF-1 | HisGTG | TTGTGAGGACAATGGCACGGCAAGGGGAGTTTGTTT | BPIFC//NFASC//DPYSL5//CYB5D2//KMT5C//TCF20//GTF2IRD1//SPTBN2//NUP205//ZNF366 |
| ts-46 | tRF-1 | HisGTG | TTGTGGAAACAATGGTACGGCAAGGGCCTCTTT | ENAM//PREX1//ARV1//C17orf53//GAS2L1//VPS18//MVP//MDN1//TF//PORCN |
| 3P_tRNA-Ile-AAT-2-1 | tRF-1 | IleAAT | AGTATTCTCTGTGGCTTT | PHACTR2//OSTM1//CIT//DNAH11//PPP1R8//TAF1//TAF1L//ABCC9//ASB11//KMT2B |
| tRF-+1:T18-Ile-AAT-5-2 | tRF-1 | IleAAT | N/A | N/A |
| tRF-+1:T15-Leu-AAG-2-4 | tRF-1 | LeuAAG | N/A | N/A |
| tRF-+1:T25-Leu-CAG-1-6 | tRF-1 | LeuCAG | ATATGTGTTTTCCGTCCTTACTTTT | PTPRG//ADGRL4//ENC1//PITPNA//RMDN3//SMARCB1//SLC8A3//CASC3//PHIP//BCL2L11 |
| 3P_tRNA-Leu-TAA-3-1 | tRF-1 | LeuTAA | AAGAGGAGTTGTTTT | MTRR//AMPH//FOXR1//ERICH1//PLS3//ZBTB44//AASS//FAM180A//DENND5A//SYNRG |
| tRF-+1:T14-Lys-TTT-3-2 | tRF-1 | LysTTT | N/A | N/A |
| 3P_tRNA-SeC-TCA-1-1 | tRF-1 | SecTCA | GGTAGTAACTAAGCGCCTTAAATCTTACTTATCGAACCGGACTTCTTT | SYTL4//ZFHX2//RBMS2//VANGL2//PLEKHD1//DCLK1//TBC1D8B//TLN1//GPATCH1//GPRIN3 |
| 3P_tRNA-Ser-GCT-5-1 | tRF-1 | SerGCT | GCTGCATAGCAAGCCTTT | RPS3//C2orf91//OR9Q2//RAP2A//SLC17A3//AKAP1//CDC42BPA//CCL22//WNK2//ARFGEF3 |
| 3P_tRNA-Ser-GCT-6-1 | tRF-1 | SerGCT | CTCGGCTTTCCCTGCTAACTGGGCTTT | NPIPB7//NPIPB9//NPIPB8//AC138894.1//NPIPB15//NPIPB6//STC2//ZNF319//NUMBL//AGAP2 |
| ts-101 | tRF-1 | SerGCT | GCTAAGGAAGTCCTGTGCTCAGTTT | LAIR2//AC013394.1//CHD2//TPP1//NAV2//ARAP1//CIDEC//C6orf89//SPACA9//SLC25A36 |
| 3P_tRNA-Ser-TGA-1-1 | tRF-1 | SerTGA | GAAGCGGGTGCTCTTATTT | GOLGA7B//CDK2AP2//ARHGAP20//ASS1//NOTCH3//UBE2L3//UBE2L5//ANO9//COG5//SYT8 |
| tRF-Ser-TGA-010 | tRF-1 | SerTGA | GAAGCGGGTGCTCTTATTTTTT | TPO//GOLGA7B//CDK2AP2//KSR1//ASS1//ARHGAP20//TMEM178A//DAPK2//NOTCH3//COX10 |
| 3P_tRNA-ThrAGT-2-2 | tRF-1 | ThrAGT | TGATTTCTGTACCTTACACATTT | BCAS1//XPO7//ZNF718//AGFG2//ZNF595//NBR1//PSD4//METTL8//COLEC10//ZNF432 |
| ts-53 | tRF-1 | ThrAGT | GCCTCCGTGTTTCCCCCACGCTTTTGCCA | SAMD12//HIPK2//NHLH2//C16orf71//SPOPL//FBXW4//FAM98C//CYP26B1//ZNF771//CAMK1D |
| 3P_tRNA-Thr-CGT-4-1 | tRF-1 | ThrCGT | GAGACCCGAGGTAGGGCTTTGGCTGTGGGGAAGTCGGGTTT | FUT5//AC024592.3//CAMK1//CDCA4//TRAF4//NUTM2B//NUTM2D//NUTM2A//NUTM2E//NUPR1 |
| 3P_tRNA-Thr-TGT-5-1 | tRF-1 | ThrTGT | TGCGAAACTACTTTCTTGATTCAGGTGTTT | PPP1R3E//LRRIQ1//AP1G1//TICRR//APOBEC3C//TBL2//MAGI3//EDNRB//ZNF362//SMG6 |
| tRF-Val-CAC-017 | tRF-1 | ValCAC | N/A | N/A |
| 3P_tRNA-Val-TAC-1-1 | tRF-1 | ValTAC | TGAGATGTTACCTAGCGTTT | ZSCAN23//CLCNKA//SLC41A3//HIPK2//TNFRSF11A//WDR35//COBL//TLN1//TMCC1//HDHD5 |
| tRF-28:41-Gln-CTG-1-M7 | tRF-2 | GlnCTG | N/A | N/A |
| 3'tRF-CAT1 | tRF-3 | AlaAGC | TCCCCAGTACCTCCACCA | SEC14L1//RIC3//GNPTAB//RETREG3//C6orf223//SNX33//KLF14//COLGALT1//PDE6C//SEMA3G |
| tRF-Ala-AGC-009 | tRF-3 | AlaAGC | TCCCCAGCATCTCCACCA | SEC14L1//RIC3//CARD6//RETREG3//SLC26A6//C6orf223//COLGALT1//CLSTN3//NTF4//SEMA3G |
| 3a_tRF-Ala-AGC/TGC | tRF-3 | AlaAGC;AlaTGC | TCCCCGGCACCTCCACCA | SEC14L1//RAB43//ISY1-RAB43//FAM171A2//SMTN//RIC3//RETREG3//EGLN3//DCHS1//PLXNB1 |
| 3a_tRF-Ala-CGC/TGC | tRF-3 | AlaCGC;AlaTGC | TCCCCGGCATCTCCACCA | SEC14L1//PABPN1//RAB43//ISY1-RAB43//FAM171A2//SMTN//GLI2//RIC3//RETREG3//FRMPD4 |
| 3a_tRF-Asn-GTT | tRF-3 | AsnGTT | CCCACCCAGGGACGCCA | PRRT4//NFE2L1//C12orf66//STON2//RPL7A//TMEM129//PLEKHG4B//KIF26B//REXO4//CPOX |
| 3a_tRF-Gln-CTG | tRF-3 | GlnCTG | TCTCGGTGGAACCTCCA | ST3GAL4//TOR3A//FNDC11//FNBP1//DCAKD//ORC1//CRTAP//SYNE2//FHAD1//TP53BP2 |
| tRF-56:75-Gln-CTG-1-M2 | tRF-3 | GlnCTG | N/A | N/A |
| 3a_tRF-Glu-TTC/CTC | tRF-3 | GluTTC;GluCTC | TTCCCGGTCAGGGAACCA | MYOCOS//PXDNL//C17orf80//RNF213//MID1//SCAF4//FBP2//OR7A5//CHST3//OSBP2 |
| 3b_tRF-Leu-CAA/CGA_n1 | tRF-3 | LeuCAA;LeuCAG | TCGAATCCCACTTCTGACACCA | PTCH1//PCYT2//ALDH1L1//CLSPN//RBM43//NGB//ZNF26//PLN//TAF8//TENM4 |
| 3b_tRF-Leu-CAA/CGA_n2 | tRF-3 | LeuCAA;LeuCAG | TCCCCGGCATCTCCACCA | SEC14L1//PABPN1//RAB43//ISY1-RAB43//FAM171A2//SMTN//GLI2//RIC3//RETREG3//FRMPD4 |
| 3b_tRF-Leu-TAA | tRF-3 | LeuTAA | TCGAACCCCACTCCTGGTACCA | DTWD1//CCDC88C//SHANK3//ELN//GDF6//SLC39A13//SIAH1//TMEM185B//AC011498.4//LHFPL5 |
| tRF-69:86-Leu-TAA-1 | tRF-3 | LeuTAA | N/A | N/A |
| 3a_tRF-Leu-TAG/AAG | tRF-3 | LeuTAG;LeuAAG | ATCCCACCGCTGCCACCA | ZNF853//KIF3B//MAML2//APOBR//VAX2//PHF19//POU3F3//RAN//ANKIB1//NGB |
| tRF-Phe-GAA-001 | tRF-3 | PheGAA | TATATACCCGGGTTTCGGCACCA | NFATC3//NFE4//PKN3//LRP10//CSMD2//PHF20//TUBA4A//HAGHL//TNFSF12-TNFSF13//TNFSF13 |
| tRF-Pro-TGG-011 | tRF-3 | ProTGG | TTAAAGACTTTTTCTCTGACCA | RPL28//RNFT1//PHEX//TASOR2//FLG//PRMT2//TSC22D1//VCPIP1//MPRIP//ZNF19 |
| 3b_tRF-Pro-TGG/AGG/CGG | tRF-3 | ProTGG;ProAGG;ProCGG | TCAAATCCCGGACGAGCCCCCA | PLPPR5//CILP2//SLC4A3//TAF5L//MXRA5//PTPRB//ZBED1//ITGB2//MLST8//ST3GAL1 |
| tRF-Ser-CGA-013 | tRF-3 | SerCGA | TCCTGTTCGTGACGCCA | MARC1//AL445423.3//MAP3K9//AL049839.2//MYT1L//ZDHHC17//DIAPH2//MLLT1//UBE3C//DIP2A |
| tRF-60:76-Tyr-GTA-1-M5 | tRF-3 | TyrGTA | N/A | N/A |
| tRF-Val-CAC-024 | tRF-3 | ValCAC | ACCGGGCAGAAGCACCA | MUC6//PCSK5//STK32A//CDC73//MMS19//NFATC3//ERO1A//SFXN3//MGAT1//AFF2 |
| tRF-Ala-AGC-046 | tRF-5 | AlaAGC | GGGGGTGTAGCTCAG | ENAH//PIK3R2//PRKDC//RHOD//GPR84//MFSD2B//PROB1//PLK3//KLF5//MROH6 |
| 5P_tRNA-Ala-CGC-1-1 | tRF-5 | AlaCGC | AAGAACGGTTTCTTAGGGTA | ATMIN//PDCD5//PPARA//THSD4//GAPVD1//PDCL3//ABCC5//GLT8D2//FBXL8//ZNF792 |
| 5P_tRNA-Ala-TGC-3-2 | tRF-5 | AlaTGC | AGCAAGTACAGGAAAGGGAG | THAP6//SLC44A2//PDZD4//EXT2//NUP62//RETREG3//AP1M1//PLEKHA5//GYPE//GREM1 |
| tRF-1:29-Gln-CTG-3 | tRF-5 | GlnCTG | N/A | N/A |
| tRF-1:29-Gln-CTG-4-M2 | tRF-5 | GlnCTG | N/A | N/A |
| tRF-1:14-Gln-TTG-1-M3 | tRF-5 | GlnTTG | N/A | N/A |
| tRF-1:22-chrM.Gln-TTG | tRF-5 | GlnTTG | N/A | N/A |
| tRF-Glu-CTC-002 | tRF-5 | GluCTC | TCCCTGGTGGTCTAG | COL6A6//TFCP2L1//MUC4//MYO15B//COL24A1//SLC39A13//HS1BP3//KLHL38//APOBEC3A//APOBEC3G |
| AS-tDR-007333_n1 | tRF-5 | GlyGCC | AAGAATTCTACCACTGAACCACCAATGC | PBX2//ADAM10//ATP6AP2//MOGS//CPOX//TRIM56//KRT4//KIF3B//POLG2//BNIP1 |
| 5P_tRNA-His-GTG-1-9 | tRF-5 | HisGTG | TCGTGGCGTCCCGGTAGCTC | SHF//P3H3//CLDN23//SLC9A7//ASTN2//NKX6-2//ADGRB1//SPC24//USP6NL//RBBP8NL |
| 3b_tRF-Leu-CAA/CGA_n3 | tRF-5 | LeuCAA;LeuCAG | N/A | N/A |
| tRF-Leu-TAA-005 | tRF-5 | LeuTAA | ACCAGGATGGCCGAGT | C6orf201//TENM4//GSTT2B//GSTT2//AQP10//HDAC1//TMEM42//GCGR//MAN2B2//ARL2BP |
| tRF-1:28-Lys-CTT-1-M4 | tRF-5 | LysCTT | N/A | N/A |
| tRF-28-PSQP4PW3FJD0 | tRF-5 | LysCTT | GCCCGGCTAGCTCAGTCGGTAGAGCATG | EBI3//RPS6KA2//RPS6KA1//RHOD//PIK3CD//ACAN//FBXL12//PRPF40B//B3GNT4//NMT1 |
| tRF-Lys-CTT-049 | tRF-5 | LysCTT | GCCCAGCTAGCTCAG | PRR14L//SMIM19//MYO15A//RHOD//WDR54//SWAP70//GDPGP1//MAG//CNTNAP1//MTA3 |
| tRF-1:24-Phe-GAA-1-M3 | tRF-5 | PheGAA | N/A | N/A |
| tRF-1:29-Pro-AGG-1-M6 | tRF-5 | ProAGG | N/A | N/A |
| tRF-1:29-Pro-TGG-1 | tRF-5 | ProTGG | N/A | N/A |
| tRF-1:16-SeC-TCA-1 | tRF-5 | SecTCA | GCCCGGATGATCCTCA | PPP1R3B//GLE1//VSIG10L//DIPK1B//ARMCX1//RPS29//MLPH//PAX5//ENY2//TENM4 |
| tRF-Thr-CGT-009 | tRF-5 | ThrCGT | GGCCCTGTAGCTCAG | RIPOR1//NET1//AIFM3//FAM114A2//CASC4//TNFSF13B//ZDHHC1//HSPA12B//SIRT7//WDR27 |
| tRF-1:29-Thr-TGT-4-M2 | tRF-5 | ThrTGT | N/A | N/A |
| tRF-31-79MP9P9NH57SD | tRF-5 | ValAAC;ValCAC | GTTTCCGTAGTGTAGTGGTTATCACGTTCGC | SLC12A5//CTNND2//CLSTN3//TNFRSF10B//CLPB//SREBF2//RABGAP1//OPLAH//FAM171A1//NLRC5 |
| tRF-Val-CAC-005 | tRF-5 | ValCAC | GCTTCTGTAGTGTAGTGGTTATC | SLC16A7//MRPL42//KCMF1//MDM4//RGS8//KCNK5//EARS2//TCP10//FNTB//CHURC1-FNTB |
| tRF-Val-CAC-008 | tRF-5 | ValCAC | GCTTCTGTAGTGTAGTGGTTATCACGTTC | SREBF2//ZBED2//PTPN14//FNTB//CHURC1-FNTB//CLASRP//SCIN//HSPA6//STARD6//THOP1 |
| tRF-Ala-AGC-036 | N/A | AlaAGC | GGGGATGTAGCTCA | JAG1//GPR84//TAF9//AK6//KNOP1//SH3BP4//WDR55//RRM2//PLEKHA2//GNA15 |
| 5P_tRNA-Arg-CCG-2-1 | N/A | ArgCCG | GAGAAGCCGGATCCTGTGGT | INTS1//SCUBE3//PLEC//GTF3C3//TLCD3B//RPL13//BTBD8//ANKEF1//ABCC11//UNC93B1 |
| 5P_tRNA-Asn-GTT-1-1 | N/A | AsnGTT | AGCCAAAATCGCCAACGCCC | PIGL//FANCC//MAGT1//RRAGC//KRT24//NUP133//REPS2//DNAJA1//POTEI//CLN3 |
| 5P_tRNA-Asn-GTT-2-3 | N/A | AsnGTT | AAGGGGAAAATGACACCGAA | FBXO40//LITAF//ASCL3//C10orf71//CFAP43//SIRT5//ZNF516//IQCK//CTDP1//IRS1 |
| 5P_tRNA-Asn-GTT-2-4 | N/A | AsnGTT | AGCGCGGCCTGAGTAACTGG | RIC8A//TENT4B//CD63//SQLE//CELSR3//SYDE1//ULK1//HIGD1A//AGGF1//DIP2A |
| 5P_tRNA-Asn-GTT-2-6 | N/A | AsnGTT | GAGAAGCCGGATCCTGTGGT | INTS1//SCUBE3//PLEC//GTF3C3//TLCD3B//RPL13//BTBD8//ANKEF1//ABCC11//UNC93B1 |
| 5P_tRNA-Gln-TTG-1-1 | N/A | GlnTTG | GCCGCCTTAAGAAGCCAGCA | PLBD2//POLR2B//LRRC47//SLC35E3//DHX16//PCDHGA1//DNAJB12//KRT16//LMAN1L//PPP4C |
| tRF-Gly-GCC | N/A | GlyGCC | N/A | N/A |
| tRF-Gly-GCC | N/A | GlyGCC | GACAATTCTACCAGTGAACCAGCCATGC | SH3PXD2A//DNASE2B//CHRNE//KCNN1//HRH1//HTR2B//PDGFRA//TSPOAP1//ATP5MC2//PCMTD1 |
| tRF-Gly-GCC-037 | N/A | GlyGCC | TATCGATTCCCGGCCCATGC | DDX46//SMIM27//ANXA2//FCGR2A//CYP2W1//SYT12//SPG7//UPF2//SGTA//ALDH3B2 |
| 5P_tRNA-Gly-TCC-1-1 | N/A | GlyTCC | AGAGGATGCTACCTATCAGG | OVCH2//FPGS//PIK3C2B//RHCG//CD46//KPTN//LMAN1L//COBL//FER//NUP58 |
| 5P_tRNA-Gly-TCC-3-1 | N/A | GlyTCC | GAAAGAGAGCTAGCACCGGA | ZNF319//NHLRC3//WTIP//ACTRT2//NOTCH4//SPIRE1//WNT10B//MBNL1//RAB11FIP4//ID4 |
| 5P_tRNA-His-GTG-1-8 | N/A | HisGTG | TCCTGTGTCCCTAGTAGCTC | LTB4R2//TAF10//AL513128.2//C13orf46//BRCC3//TNFRSF6B//RTEL1-TNFRSF6B//PLEC//DSPP//FAM181B |
| 5P_tRNA-Ile-TAT-2-3 | N/A | IleTAT | GGCCAAGCAAAGGAAAGCAT | SFRP4//GLUL//IL13RA2//C12orf45//GINS2//DOCK5//ZBTB16//TRIM13//TPD52L1//PCED1B |
| i-tRFMet-CAT-014 | N/A | iMetCAT | GCGAAACCATCCTCTGCTACCA | KRT2//KRT76//ELFN2//GAR1//NKTR//CHP2//RNF111//KRT3//SETD7//TLE3 |
| tRF-Leu-GAG | N/A | LeuGAG | N/A | N/A |
| tRF-Pro-CGG-008 | N/A | ProCGG | GCTTCGGGTGTGAG | PTCH2//PSG1//ZNF668//PIWIL3//BRD3OS//INPP5E//PARP4//TSC22D3//ARHGDIA//MED13L |
| tRF-Thr-CGT-001 | N/A | ThrCGT | TATATATACCCCGTCCGTGCCTCC | ZNF282//GABARAPL1//OBSL1//SHOC2//UBALD1//USP6NL//CIC//SLC22A18//ZNF865//KPNA4 |
| tRF-Trp-CCA-057 | N/A | TrpCCA | GGCCTCGTGGCGCA | MID2//ANO8//FEM1A//GRK6//STARD13//SMCR8//CLDN7//CAMK2D//ACTN3//IMP4 |
| tRF-55:76-Tyr-GTA-1-M2 | N/A | TyrGTA | N/A | N/A |
| tRF-31-79MP9P9NH57SD | N/A | N/A | GTTTCCGTAGTGTAGTGGTTATCACGTTCGC | SLC12A5//CTNND2//CLSTN3//TNFRSF10B//CLPB//SREBF2//RABGAP1//OPLAH//FAM171A1//NLRC5 |
| ts-4521 | N/A | N/A | N/A | N/A |
| tsRNA-Ala | N/A | N/A | N/A | N/A |
| tsRNA-Asn | N/A | N/A | N/A | N/A |
| tsRNA-Leu | N/A | N/A | N/A | N/A |
| tsRNA-Lys | N/A | N/A | N/A | N/A |
| tsRNA-Tyr | N/A | N/A | N/A | N/A |