tsRNADisease

Associated tsRNAs in Alzheimer Disease

tsRNA_Name	tsRNA_Type	Anticodon	Sequence	Target_Gene
tiRNA-3s	3'-tiRNA	N/A	N/A	N/A
mt-tsRNA-Gln-TTG	3'-tiRNA;5'-tiRNA	GlnTTG	N/A	N/A
tRF5-GluCTC	5'-tiRNA	GluCTC	TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT	TFCP2L1//EME2//RFTN1//TMEM92//PAQR4//CCDC159//SLC25A48//SLC25A6//TMEM69//CHRNB4
tiRNA-Glu-TTC-003	5'-tiRNA	GluTTC	TCCCTGGTGGTCTAGTGGCTAGGATTCGGCGCTT	PAQR4//TMEM69//RFTN1//BAHCC1//DDX60//TFCP2L1//PHETA1//CHRNB4//SLC25A6//EME2
tiRNA-Gly-GCC-001	5'-tiRNA	GlyGCC	GCATAGGTGGTTCAGTGGTAGAATTCTTGCCTG	FCGR2A//LHX8//ZNF513//NDUFAF1//ZNF778//KCTD9//ERAS//SPRN//SORCS1//ARPP21
tRF5-GlyGCC	5'-tiRNA	GlyGCC	GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT	FCGR2A//LPAR1//DPF1//ABLIM2//ERAS//ST3GAL2//SLC26A6//COL6A5//ANAPC2//DNAH12
tiRNA-iMet-CAT-001	5'-tiRNA	iMetCAT	AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCC	TBC1D5//SIRPB1//IFIH1//SRPX//LHX6//ZNF579//SETD4//SRRM2//ZFAND3//CCL14
tiRNA-Ser-GCT-001	5'-tiRNA	SerGCT	AAGAAAGATTGCAAGAACTG	AP1G1//MESP1//TBK1//YME1L1//OR11H4//PHTF2//CNBD1//PSMD9//GPR180//TAPT1
tiRNA-Val-AAC-002	5'-tiRNA	ValAAC	GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTA	ZBED2//CTNND2//CDYL2//SLC12A5//KIAA1549//HK2//CLSTN3//CELA2A//ACAP1//LRRN3
tiRNA-Val-CAC-002	5'-tiRNA	ValCAC	GTTTCCGTAGTGTAGCGGTTATCACATTCGCCTC	PLEKHG5//CDYL2//KLK10//GPC6//GALNTL6//ILRUN//SOCS2//SNX1//TRERF1//CIAO3
tiRNA-Val-CAC-003	5'-tiRNA	ValCAC	GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTC	ZBED2//CTNND2//SLC12A5//CDYL2//KIAA1549//STK36//CELA2A//ACAP1//CDC25C//HK2
tiRNA-Val-CAC-004	5'-tiRNA	ValCAC	N/A	N/A
tiRNA-5s	5'-tiRNA	N/A	N/A	N/A
AS-tDR-011363	i-tRF	AspGTC	CTGTCACGCGGGAGACCGGGGC	LTBP3//KRT5//FCGR2A//FAHD2A//SIK3//OR4C13//KIFC3//HOMER3//ARHGEF10L//SARM1
tRFi-GlnCTG	i-tRF	GlnCTG	N/A	N/A
tiRNA-Gly-GCC-002_n1	i-tRF	GlyGCC	ATCGCATTGGTGGTTCAGTG	FCGR2A//ERAS//ZNF526//ADAR//RWDD1//PRDM15//RC3H2//COMMD3//TBC1D2B//PTGER4
AS-tDR-005058	i-tRF	SerGCT	CTTTGCACGCGTGGGT	WFS1//TLNRD1//RAB1A//PPP4R3C//LFNG//TCF7L2//RIN1//GPT//SEMA5B//PRICKLE1
AS-tDR-011389	i-tRF	N/A	CGGGAGACCGGGGC	MATN4//ABCC3//FAM43B//ZNF469//PKP4//RPA1//PLXNA2//SLFN12L//RBBP4//CCDC38
tRF-GIn-CTG-043	tRF-1	GlnCTG	N/A	N/A
tRF-Met-CAT-060	tRF-1	MetCAT	N/A	N/A
tRF-Thr-CGT-003	tRF-1	ThrCGT	N/A	N/A
tRF-Thr-CGT-019	tRF-1	ThrCGT	GAGACCCGAGGTAGGGCTTT	REEP4//C3orf20//HOXC12//ANKRD12//FAM214B//CES2//CBL//CST4//USP7//TIGD2
AS-tDR-011775	tRF-1	ValTAC	GTGGTGTGCTAGTTAATTT	CREM//IFNA5//ABRAXAS1//KATNAL2//GPR26//SLX4//SHB//MED23//INTS7//ZNF226
tRF-Leu-TAG-015	tRF-2	LeuTAG	N/A	N/A
tRF-Cys-GCA-057	tRF-3	CysGCA	N/A	N/A
tRF-Gln-CTG-005	tRF-3	GlnCTG	TCTCGGTGGAACCTCCA	ST3GAL4//TOR3A//FNDC11//FNBP1//DCAKD//ORC1//CRTAP//SYNE2//FHAD1//TP53BP2
tRF-Gly-CCC-042	tRF-3	GlyCCC	N/A	N/A
tRF-Gly-GCC-025	tRF-3	GlyGCC	N/A	N/A
tRNA-Gly-GCC-1-1-tRF3	tRF-3	GlyGCC	N/A	N/A
tRNA-Gly-GCC-1-2-tRF3	tRF-3	GlyGCC	N/A	N/A
tRNA-Gly-GCC-1-3-tRF3	tRF-3	GlyGCC	N/A	N/A
tRNA-Gly-GCC-1-4-tRF3	tRF-3	GlyGCC	N/A	N/A
3'-tRFIleAAT	tRF-3	IleAAT	N/A	N/A
3'tRF-LysTTT	tRF-3	LysTTT	N/A	N/A
tRNA-Pro-AGG-3-1-tRF3	tRF-3	ProAGG	N/A	N/A
tRF-Pro-TGG-003	tRF-3	ProTGG	AGACTTTTTCTCTGACCA	RPL28//PHEX//TASOR2//TSC22D1//FLG//RNFT1//PRMT2//PRKAG3//MPRIP//PRKD1
tRNA-Pro-TGG-1-1-tRF3	tRF-3	ProTGG	N/A	N/A
tRF-Ser-GCT-035	tRF-3	SerGCT	TAACAACATGGCTTTCTCACCA	S100A7L2//SNX25//DYNC1LI2//SGSM3//TSEN2//TENT5A//AL022238.4//PALD1//SGK1//DCDC1
tRNA-Ser-TGA-1-1-tRF3	tRF-3	SerTGA	N/A	N/A
tRF-Thr-AGT-003	tRF-3	ThrAGT	N/A	N/A
tRNA-Tyr-GTA-2-1-tRF3	tRF-3	TyrGTA	N/A	N/A
tRF-3s	tRF-3	N/A	N/A	N/A
tRF-Ala-AGC-011	tRF-5	AlaAGC	N/A	N/A
tRF-Ala-AGC-013_n1	tRF-5	AlaAGC	ATCCCCAGTACCTCCACCA	SEC14L1//RIC3//RETREG3//GNPTAB//RNF130//COLGALT1//KLF14//PDE6C//ARMCX4//SEMA3G
tRFAla-AGC-3-M8	tRF-5	AlaAGC	ACTGAGCTACATCCCC	FADS6//TPP1//STK24//PGPEP1//SF3A3//APEX1//ASCC3//MBP//IGSF9B//LTBP3
5'AlaTGC	tRF-5	AlaTGC	GCTCTACCACTGAGCTACATCCCC	FADS6//HIPK1//DIPK1C//ARL15//STAT3//MCEMP1//SMIM35//MEGF8//CLN8//EIF4G3
tRF5-CysGCA	tRF-5	CysGCA	N/A	N/A
5'GluCTC	tRF-5	GluCTC	AATCCTAACCACTAGACCACCAGGGA	HMCN2//REEP4//KCNJ10//FIS1//SERPINB6//SPSB2//ZHX2//CD84//CADM1//B3GALT5
tRF5-GluCTC	tRF-5	GluCTC	N/A	N/A
AS-tDR-000586	tRF-5	GluTTC	TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTTTC	SGMS2//MOB3C//PPP1R26//SLC52A3//EEF1D//WSCD2//SRGAP2C//TENT5A//ADAMTS19//NFKBIL1
tRF-Glu-TTC-010	tRF-5	GluTTC	TCCCACATGGTCTAGCGGTTAGGATTCCT	PPP1R26//ZNF654//COLGALT1//SGMS2//CLEC18A//CLEC18C//CLEC18B//GFER//SLC2A10//KCNF1
tRF-Glu-TTC-013	tRF-5	GluTTC	N/A	N/A
tRF-Glu-TTC-020	tRF-5	GluTTC	TCCCATATGGTCTAGCGGTTAGGATTCCTGG	CYB561A3//PPP1R26//SGMS2//MOB3C//CCDC24//CLEC18A//CLEC18B//CLEC18C//COPS5//GNAZ
tRF-Glu-TTC-025	tRF-5	GluTTC	TCCCTGGTGGTCTAGTGGCTAGGATTCGGCGC	RFTN1//SLC25A6//PAQR4//EME2//ESPL1//TMEM69//TFCP2L1//BAHCC1//CLEC14A//PRKRA
tRF5-GluTTC-2	tRF-5	GluTTC	N/A	N/A
tRF5-GluTTC-3	tRF-5	GluTTC	N/A	N/A
tRF-Gly-CCC-008	tRF-5	GlyCCC	N/A	N/A
tRF-Gly-CCC-009	tRF-5	GlyCCC	GCATTGGTGGTTCAGTGGTAGAAT	FCGR2A//OLFM3//OR7C1//MUCL1//PCGF5//HSD17B4//MRRF//PEG10//FAM149B1//SH3GLB1
tRF-Gly-CCC-012	tRF-5	GlyCCC	N/A	N/A
tRF5-GlyCCC-2	tRF-5	GlyCCC	N/A	N/A
5'GlyGCC	tRF-5	GlyGCC	AATCCTAACCACTAGACCACCAGGGA	HMCN2//REEP4//KCNJ10//FIS1//SERPINB6//SPSB2//ZHX2//CD84//CADM1//B3GALT5
tRF-Gly-GCC-009	tRF-5	GlyGCC	GCATGGGTGGTTCAGTGGTAGAATTCTCGC	FCGR2A//SORCS1//POLR1A//ZNFX1//PPARGC1B//HSD17B4//PTCD3//PLA2R1//ITPKB//LPAR1
tRF5-GlyGCC	tRF-5	GlyGCC	N/A	N/A
tRNA-Gly-GCC-1-5-tRF5	tRF-5	GlyGCC	N/A	N/A
tRF-His-GTG-021	tRF-5	HisGTG	N/A	N/A
tRF-His-GTG-022	tRF-5	HisGTG	N/A	N/A
tRF-His-GTG-023	tRF-5	HisGTG	N/A	N/A
tRF5-HisGTG-1	tRF-5	HisGTG	N/A	N/A
tRNA-iMet-CAT-1-7-tRF5	tRF-5	iMetCAT	N/A	N/A
tRF-Leu-AAG-005	tRF-5	LeuAAG	N/A	N/A
tRF-Leu-AAG-011	tRF-5	LeuAAG	N/A	N/A
tRF-Leu-CAA-004	tRF-5	LeuCAA	GTCAGGATGGCCGAGT	GSTT2B//GSTT2//AHRR//C6orf201//SEC13//TENM4//HRH4//HKDC1//COL11A1//LYL1
tRF5-LeuCAG	tRF-5	LeuCAG	N/A	N/A
tRF-Leu-TAG-011	tRF-5	LeuTAG	N/A	N/A
tRF5-LysCTT-1	tRF-5	LysCTT	N/A	N/A
AS-tDR-000924	tRF-5	LysTTT	GCCCGGATAGCTCAGT	FAM234B//TSR3//SIAH3//GLDN//EBI3//HTR5A//GLG1//UBXN10//AGAP4//AGAP6
tRF5-LysTTT	tRF-5	LysTTT	N/A	N/A
tRF-Pro-AGG-012	tRF-5	ProAGG	N/A	N/A
tRF5-ProAGG	tRF-5	ProAGG	GGCTCGTTGGTCTAGGGGGTATGATTCTCGCTT	BLMH//NKX2-8//HMGN2//DOCK9//CTCF//REM1//STAB2//VIRMA//SH3GL1//NOMO2
tRNA-Pro-AGG-2-6-tRF5	tRF-5	ProAGG	N/A	N/A
tRNA-Pro-TGG-2-1-tRF5	tRF-5	ProTGG	N/A	N/A
tRF-1:22-chrM.Ser-GCT	tRF-5	SerGCT	GAGAAAGCTCACAAGAACTGCT	PTPRZ1//C4orf33//GTPBP10//SLC24A4//SCGN//ZNF540//TBC1D19//DTX4//SYNPO2//ARIH1
tRNA-Trp-CCA-3-2-tRF5	tRF-5	TrpCCA	N/A	N/A
tRF-Val-AAC-011	tRF-5	ValAAC	N/A	N/A
tRF-Val-AAC-015	tRF-5	ValAAC	GTTTCCGTAGTGTAGTGGTTATCACGTTCGC	SLC12A5//CTNND2//CLSTN3//TNFRSF10B//CLPB//SREBF2//RABGAP1//OPLAH//FAM171A1//NLRC5
tRF-Val-AAC-018	tRF-5	ValAAC	N/A	N/A
tRF-Val-AAC-030	tRF-5	ValAAC	N/A	N/A
tRF-Val-CAC-018	tRF-5	ValCAC	N/A	N/A
tRF5-ValCAC-1	tRF-5	ValCAC	N/A	N/A
tRF5-ValCAC-2	tRF-5	ValCAC	N/A	N/A
tRF-Val-TAC-010	tRF-5	ValTAC	GGTTCCATAGTGTAG	NEFL//XIRP1//ROS1//CTRC//METTL1//PTPRT//GIPR//CACNA2D1//MMACHC//LRRFIP1
tRF-Val-TAC-031	tRF-5	ValTAC	N/A	N/A
tRNA-Val-TAC-1-1-tRF5	tRF-5	ValTAC	N/A	N/A
tRNA-Val-TAC-2-1-tRF5	tRF-5	ValTAC	GGTTCCATAGTGTAGCGGTTATCACGTCTG	SCAF1//NEFL//MTPAP//SARM1//METTL1//ZNF366//SLC39A4//TCF21//TMBIM6//AP2A2
AS-tDR-013428	tRF-5	N/A	GTCTAGTGGTTAGGATA	TFCP2L1//LRIT1//CAT//OR51F1//TBCE//ASXL3//HEATR5A//ITGB8//CNTN2//ARMCX4
tRF-5	tRF-5	N/A	N/A	N/A
TRA-AGC6-1.1	N/A	AlaAGC	N/A	N/A
tRF-Ala-AGC-056	N/A	AlaAGC	N/A	N/A
tRF-Ala-AGC-057	N/A	AlaAGC	N/A	N/A
tRF-Ala-TGC-002	N/A	AlaTGC	N/A	N/A
tRF-Ala-TGC-027	N/A	AlaTGC	N/A	N/A
tRF-Ala-TGC-035	N/A	AlaTGC	N/A	N/A
tiRNA-Asn-GTT-001	N/A	AsnGTT	N/A	N/A
tRF-Asn-GTT-016	N/A	AsnGTT	N/A	N/A
tRF-Asn-GTT-047	N/A	AsnGTT	N/A	N/A
tRF-Cys-GCA-007	N/A	CysGCA	N/A	N/A
tRF-Cys-GCA-027	N/A	CysGCA	N/A	N/A
tRF-Cys-GCA-029	N/A	CysGCA	N/A	N/A
tiRNA-Gln-CTG-002	N/A	GlnCTG	N/A	N/A
tRF-55-75-Gln-CTG-2-M2	N/A	GlnCTG	N/A	N/A
tRF-GIn-TTG-019	N/A	GlnTTG	N/A	N/A
AS-tDR-007725	N/A	GluCTC	TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTCTC	DNASE1//PAQR4//MAMDC4//CHST3//BHLHE40//ZNF780B//TMEM69//ARHGEF17//HSD17B14//SIPA1
Glu-5'tsRNA-CTC	N/A	GluCTC	N/A	N/A
tRF-54-75-Glu-TTC-2	N/A	GluTTC	N/A	N/A
tRF-Glu-TTC-028	N/A	GluTTC	N/A	N/A
tiRNA-Gly-CCC-001	N/A	GlyCCC	N/A	N/A
tRF-Gly-CCC-010	N/A	GlyCCC	N/A	N/A
tRF-Gly-CCC-011	N/A	GlyCCC	N/A	N/A
tiRNA-Gly-GCC	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-009	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-012	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-013	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-014	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-015	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-016	N/A	GlyGCC	N/A	N/A
tRF-Gly-GCC-017	N/A	GlyGCC	N/A	N/A
tRF-His-GTG-017	N/A	HisGTG	N/A	N/A
tRF-lle-AAT-012	N/A	IleAAT	N/A	N/A
tRF-64-85-Leu-AAG-1-M4	N/A	LeuAAG	N/A	N/A
tiRNA-Leu-CAG-002	N/A	LeuCAG	N/A	N/A
tRF-Leu-CAG-023	N/A	LeuCAG	N/A	N/A
tRNA-Leu-CAG-1-6-tRF5	N/A	LeuCAG	N/A	N/A
tRNA-Leu-CAG-2-2-tRF5	N/A	LeuCAG	N/A	N/A
tRF-Leu-TAA-007	N/A	LeuTAA	N/A	N/A
tRF-Leu-TAG-014	N/A	LeuTAG	N/A	N/A
tiRNA-Met-CAT-002	N/A	MetCAT	N/A	N/A
tRF-Met-CAT-016	N/A	MetCAT	N/A	N/A
tRF-Met-CAT-017	N/A	MetCAT	N/A	N/A
tRF-Met-CAT-051	N/A	MetCAT	N/A	N/A
tRF-Ser-AGA-016	N/A	SerAGA	N/A	N/A
tRF-Ser-AGA-017	N/A	SerAGA	N/A	N/A
tRF-Ser-GCT-078	N/A	SerGCT	N/A	N/A
tRF-Thr-AGT-022	N/A	ThrAGT	N/A	N/A
tRF-Thr-CGT-004	N/A	ThrCGT	N/A	N/A
tRF-55-76-Val-TAC-1	N/A	ValTAC	N/A	N/A
AS-tDR-000586	N/A	N/A	N/A	N/A
AS-tDR-000924	N/A	N/A	N/A	N/A
AS-tDR-006835	N/A	N/A	N/A	N/A
AS-tDR-007725	N/A	N/A	N/A	N/A
AS-tDR-010789	N/A	N/A	N/A	N/A
AS-tDR-011363	N/A	N/A	N/A	N/A
AS-tDR-011670	N/A	N/A	N/A	N/A
AS-tDR-012690	N/A	N/A	N/A	N/A
tiRNA-Val-CAC-002	N/A	N/A	N/A	N/A
tRF-188R6546D2	N/A	N/A	N/A	N/A
tRF-1s	N/A	N/A	N/A	N/A
tRF-2s	N/A	N/A	N/A	N/A
tRF-Cys-GCA-029	N/A	N/A	N/A	N/A
tsRNA-Arg	N/A	N/A	N/A	N/A
tsRNA-Tyr	N/A	N/A	N/A	N/A

tsRNADisease v1.0

Associated tsRNAs in Alzheimer Disease