Entry Detail



General Information

Database ID:TRD04645
Confidence:Very High
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tsRNA-3043a
tsRNA Type:N/A
Amino acid and Anticodon:GlyGCC
Sequence:TTCCCGGCCCATGCACCA
Related Target:FLT1
Predicted Target:ST6GAL2//NAP1L4//PBX2//CPXM2//PHKG1//AHDC1//CYP2W1//ZYG11A//ATP11A//CPLX2
External Links:
MINTbase ID:tRF-18-YR6RIFD2
tRFdb ID:N/A

[1] gtRNAdb_ID:tRNA-Gly-GCC-1-1
Anticodon:GlyGCC
tRNA_number:trna35
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161413150        End Site(bp): 161413164+3

[2] gtRNAdb_ID:tRNA-Gly-GCC-1-2
Anticodon:GlyGCC
tRNA_number:trna37
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161420523        End Site(bp): 161420537+3

[3] gtRNAdb_ID:tRNA-Gly-GCC-1-3
Anticodon:GlyGCC
tRNA_number:trna39
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161427954        End Site(bp): 161427968+3

[4] gtRNAdb_ID:tRNA-Gly-GCC-1-4
Anticodon:GlyGCC
tRNA_number:trna41
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161435314        End Site(bp): 161435328+3

[5] gtRNAdb_ID:tRNA-Gly-GCC-1-5
Anticodon:GlyGCC
tRNA_number:trna2
Chromosome:21
Strand:-
Coordinate:Start Site(bp): 18827107-3        End Site(bp): 18827121



tsRNA Association Statistics

Total Associated Disease Number:1
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D016649DOID:10787
Disease Name:Primary Ovarian Insufficiencypremature menopause
Category:MeSHDisease Ontology
Type:Urogenital Diseases//Endocrine System Diseasesdisease of anatomical entity//reproductive system disease
Define:Cessation of ovarian function after MENARCHE but before the age of 40, without or with OVARIAN FOLLICLE depletion. It is characterized by the presence of OLIGOMENORRHEA or AMENORRHEA, elevated GONADOTROPINS, and low ESTRADIOL levels. It is a state of female HYPERGONADOTROPIC HYPOGONADISM. Etiologies include genetic defects, autoimmune processes, chemotherapy, radiation, and infections. The most commonly known genetic cause is the expansion of a CGG repeat to 55 to 199 copies in the 5' untranslated region in the X-linked FMR1 gene.An ovarian dysfunction that is the loss of normal ovarian function before age 40.
Alias:FMR1-Related Primary Ovarian Insufficiency//Fragile X Premature Ovarian Failure//Fragile X-Associated Primary Ovarian Insufficiency//Gonadotropin-Resistant Ovary Syndrome//Hypergonadotropic Ovarian Failure, X-Linked//Ovarian Failure, Premature//Premature Ovarian Failure//Premature Ovarian Failure 1//Premature Ovarian Failure, X-Linked//Primary Ovarian Insufficiency, Fragile X-Associated//Resistant Ovary Syndrome//X-Linked Hypergonadotropic Ovarian FailureMenopause - premature//Menopause praecox



Disease Association Statistics

Total Associated tsRNA Number:1
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:RT-PCR//Western blot//ELISA
Weak Evidence:High-throughput sequencing



Reference

[1] PubMed ID:39343854
Disease Name:Primary Ovarian Insufficiency
Tissue:Ovary
Dysfunction Pattern:N/A
Validated Method:RT-PCR//Western blot//ELISA//High-throughput sequencing
Description:In this study, we revealed a novel molecular mechanism by which tsRNA-3043a promotes POF via inhibiting FLT1(Fig. 10). Targeting tsRNA-3043a may be a novel strategy for pharmacological treatment of POF.
Comparision:Disease VS Control
Mechanism:TsRNAs are small regulatory non-code RNAs that cleavage from mature tRNA or precursor tRNA, which exert biological roles through multiple mechanisms, including interaction with proteins or mRNA, repression of translation, regulation of gene expression, chromatin and epigenetic modifications (Xie et al. 2020). However, only three studies on “tsRNA ovarian” were retrieved from the PubMed. One of them was a comprehensive analysis of non-coding RNAs in the ovarian of Onychostoma macrolepis in the late overwintering and breeding period, and identified 235 differentially expressed tsRNAs, including tRFi-Lys-CTT-1 and tRFi-Gly-GCC-1(Peng et al. 2022). Secondly, Panoutsopoulou et al. Found that i-tRF-GlyGCC expression was abundant in ovarian tumors and can be used for prognostic assessment of patients with epithelial ovarian cancer (Panoutsopoulou et al. 2021). Thirdly, Panoutsopoulou et al. Demonstrated that the 3’U-tRFValCAC promotes a malignant phenotype in ovarian cancer (Panoutsopoulou et al. 2023). Although these three studies are different from the mechanism of POF, they may strongly confirm that tsRNAs play an important role in the pathology of ovarian. In addition, tsRNAs are often thought to play similar roles to miRNAs in a manner of “miRNA-like” (Krishna et al. 2021).