Entry Detail


General Information

Database ID:TRD04008
Confidence:Median
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRNA-Val-AAC-1-1
tsRNA Type:tRF-5
Amino acid and Anticodon:ValAAC
Sequence:GTTTCCGTAGTGTAGTGGT
Related Target:N/A
Predicted Target:CTNND2//TREM2//ZBED2//ELMO3//RGS8//HNRNPUL1//KLK10//MYH6//CEL//KRTAP19-8
External Links:
MINTbase ID:tRF-19-79MP9PJZ
tRFdb ID:N/A

[1] gtRNAdb_ID:tRNA-Val-AAC-5-1
Anticodon:ValAAC
tRNA_number:trna37
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27203288        End Site(bp): 27203306

[2] gtRNAdb_ID:tRNA-Val-AAC-4-1
Anticodon:ValAAC
tRNA_number:trna136
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27648939        End Site(bp): 27648957

[3] gtRNAdb_ID:tRNA-Val-AAC-3-1
Anticodon:ValAAC
tRNA_number:trna139
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27618761        End Site(bp): 27618779

[4] gtRNAdb_ID:tRNA-Val-AAC-2-1
Anticodon:ValAAC
tRNA_number:trna15
Chromosome:5
Strand:-
Coordinate:Start Site(bp): 180615470        End Site(bp): 180615488

[5] gtRNAdb_ID:tRNA-Val-AAC-1-1
Anticodon:ValAAC
tRNA_number:trna2
Chromosome:3
Strand:+
Coordinate:Start Site(bp): 169490018        End Site(bp): 169490036

[6] gtRNAdb_ID:tRNA-Val-AAC-1-4
Anticodon:ValAAC
tRNA_number:trna12
Chromosome:5
Strand:-
Coordinate:Start Site(bp): 180645324        End Site(bp): 180645342

[7] gtRNAdb_ID:tRNA-Val-AAC-1-2
Anticodon:ValAAC
tRNA_number:trna4
Chromosome:5
Strand:+
Coordinate:Start Site(bp): 180591154        End Site(bp): 180591172

[8] gtRNAdb_ID:tRNA-Val-AAC-1-3
Anticodon:ValAAC
tRNA_number:trna5
Chromosome:5
Strand:+
Coordinate:Start Site(bp): 180596610        End Site(bp): 180596628

[9] gtRNAdb_ID:tRNA-Val-AAC-1-5
Anticodon:ValAAC
tRNA_number:trna132
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27721233        End Site(bp): 27721251

[10] gtRNAdb_ID:tRNA-Val-CAC-7-1
Anticodon:ValCAC
tRNA_number:trna133
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27696381        End Site(bp): 27696399

[11] gtRNAdb_ID:tRNA-Val-CAC-5-1
Anticodon:ValCAC
tRNA_number:trna90
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 149684143        End Site(bp): 149684161

[12] gtRNAdb_ID:tRNA-Val-CAC-4-1
Anticodon:ValCAC
tRNA_number:trna98
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 149298609        End Site(bp): 149298627

[13] gtRNAdb_ID:tRNA-Val-CAC-1-1
Anticodon:ValCAC
tRNA_number:trna85
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161369544        End Site(bp): 161369562

[14] gtRNAdb_ID:tRNA-Val-CAC-1-5
Anticodon:ValCAC
tRNA_number:trna10
Chromosome:5
Strand:-
Coordinate:Start Site(bp): 180649449        End Site(bp): 180649467

[15] gtRNAdb_ID:tRNA-Val-CAC-1-3
Anticodon:ValCAC
tRNA_number:trna18
Chromosome:5
Strand:-
Coordinate:Start Site(bp): 180529307        End Site(bp): 180529325

[16] gtRNAdb_ID:tRNA-Val-CAC-1-2
Anticodon:ValCAC
tRNA_number:trna2
Chromosome:5
Strand:+
Coordinate:Start Site(bp): 180524070        End Site(bp): 180524088

[17] gtRNAdb_ID:tRNA-Val-CAC-1-4
Anticodon:ValCAC
tRNA_number:trna6
Chromosome:5
Strand:+
Coordinate:Start Site(bp): 180600650        End Site(bp): 180600668

[18] gtRNAdb_ID:tRNA-Val-CAC-1-6
Anticodon:ValCAC
tRNA_number:trna9
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 26538282        End Site(bp): 26538300



tsRNA Association Statistics

Total Associated Disease Number:1
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:
Disease Name:
Category:
Type:
Define:
Alias:



Disease Association Statistics

Total Associated tsRNA Number:22
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:N/A
Weak Evidence:High-throughput sequencing



Reference

[1] PubMed ID:31616639
Disease Name:oral squamous cell carcinoma
Tissue:N/A
Dysfunction Pattern:Down-Regulation
Validated Method:High-throughput sequencing
Description:The differential expression analysis revealed that OSCC decreased the serum levels of 22 types of 5' tRNA halves with average read counts-per-million (CPM) >1,770,fold decrease >5,and FDR<00.01% (Table 1).
Comparision:N/A
Mechanism:N/A