Entry Detail


General Information

Database ID:TRD03868
Confidence:Median
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-Ser-AGA-004
tsRNA Type:tRF-5
Amino acid and Anticodon:SerAGA
Sequence:GTAGTCGTGGCCGAGT
Related Target:N/A
Predicted Target:SOX1//PLEKHH3//CLDN5//POLI//USP28//CREB3L1//AC004593.3//RUNX1//ADAT3//GRIN2D
External Links:
MINTbase ID:tRF-16-S3M830E
tRFdb ID:N/A

[1] gtRNAdb_ID:tRNA-Ser-AGA-4-1
Anticodon:SerAGA
tRNA_number:trna145
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27521258        End Site(bp): 27521273

[2] gtRNAdb_ID:tRNA-Ser-AGA-3-1
Anticodon:SerAGA
tRNA_number:trna50
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27499987        End Site(bp): 27500002

[3] gtRNAdb_ID:tRNA-Ser-AGA-2-6
Anticodon:SerAGA
tRNA_number:trna35
Chromosome:17
Strand:-
Coordinate:Start Site(bp): 8129994        End Site(bp): 8130009

[4] gtRNAdb_ID:tRNA-Ser-AGA-2-2
Anticodon:SerAGA
tRNA_number:trna44
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27446591        End Site(bp): 27446606

[5] gtRNAdb_ID:tRNA-Ser-AGA-2-3
Anticodon:SerAGA
tRNA_number:trna46
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27463593        End Site(bp): 27463608

[6] gtRNAdb_ID:tRNA-Ser-AGA-2-4
Anticodon:SerAGA
tRNA_number:trna47
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27470818        End Site(bp): 27470833

[7] gtRNAdb_ID:tRNA-Ser-AGA-2-1
Anticodon:SerAGA
tRNA_number:trna5
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 26327817        End Site(bp): 26327832

[8] gtRNAdb_ID:tRNA-Ser-AGA-2-5
Anticodon:SerAGA
tRNA_number:trna11
Chromosome:8
Strand:-
Coordinate:Start Site(bp): 96281951        End Site(bp): 96281966

[9] gtRNAdb_ID:tRNA-Ser-AGA-1-1
Anticodon:SerAGA
tRNA_number:trna147
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27509620        End Site(bp): 27509635

[10] gtRNAdb_ID:tRNA-Ser-TGA-4-1
Anticodon:SerTGA
tRNA_number:trna148
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27473673        End Site(bp): 27473688

[11] gtRNAdb_ID:tRNA-Ser-TGA-3-1
Anticodon:SerTGA
tRNA_number:trna172
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 26312890        End Site(bp): 26312905

[12] gtRNAdb_ID:tRNA-Ser-TGA-2-1
Anticodon:SerTGA
tRNA_number:trna51
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27513468        End Site(bp): 27513483



tsRNA Association Statistics

Total Associated Disease Number:1
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D017719N/A
Disease Name:Diabetic FootN/A
Category:MeSHDisease Ontology
Type:Cardiovascular Diseases//Skin and Connective Tissue Diseases//Endocrine System DiseasesN/A
Define:Common foot problems in persons with DIABETES MELLITUS, caused by any combination of factors such as DIABETIC NEUROPATHIES; PERIPHERAL VASCULAR DISEASES; and INFECTION. With the loss of sensation and poor circulation, injuries and infections often lead to severe foot ulceration, GANGRENE and AMPUTATION, SURGICAL.N/A
Alias:Diabetic Feet//Foot Ulcer, DiabeticN/A



Disease Association Statistics

Total Associated tsRNA Number:277
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:N/A
Weak Evidence:High-throughput sequencing//Data Mining



Reference

[1] PubMed ID:34657473
Disease Name:Diabetic Foot
Tissue:Skin
Dysfunction Pattern:Up-Regulation
Validated Method:High-throughput sequencing//Data Mining
Description:In addition, 244 tsRNAs were confirmed to be dysregulated in DFU tissues: 178 tsRNAs were upregulated, whereas 66 tsRNAs were downregulated (DFU vs normal; FC >1.5 and p < 0.05; Figure 2D & Supplementary data 105).
Comparision:DFU VS Normal
Mechanism:N/A