Entry Detail


General Information

Database ID:TRD03500
Confidence:High
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-30-XSXMSL73VL4Y
tsRNA Type:tRF-5
Amino acid and Anticodon:HisGTG
Sequence:TGCCGTGATCGTATAGTGGTTAGTACTCTG
Related Target:N/A
Predicted Target:SHF//OTUB2//FAM49B//RBMXL2//CXCL16//TEP1//COX7B//SEMA4G//SUSD5//LRP4
External Links:
MINTbase ID:tRF-30-XSXMSL73VL4Y
tRFdb ID:tRNA-His-GTG-1-4

[1] gtRNAdb_ID:tRNA-His-GTG-1-4
Anticodon:HisGTG
tRNA_number:trna111
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 147774888        End Site(bp): 147774916+1

[2] gtRNAdb_ID:tRNA-His-GTG-1-1
Anticodon:HisGTG
tRNA_number:trna118
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 145396924        End Site(bp): 145396952+1

[3] gtRNAdb_ID:tRNA-His-GTG-1-2
Anticodon:HisGTG
tRNA_number:trna16
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 146544773-1        End Site(bp): 146544801

[4] gtRNAdb_ID:tRNA-His-GTG-1-3
Anticodon:HisGTG
tRNA_number:trna21
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 147753471-1        End Site(bp): 147753499

[5] gtRNAdb_ID:tRNA-His-GTG-1-9
Anticodon:HisGTG
tRNA_number:trna1
Chromosome:15
Strand:+
Coordinate:Start Site(bp): 45493349-1        End Site(bp): 45493377

[6] gtRNAdb_ID:tRNA-His-GTG-1-8
Anticodon:HisGTG
tRNA_number:trna8
Chromosome:15
Strand:-
Coordinate:Start Site(bp): 45492654        End Site(bp): 45492682+1

[7] gtRNAdb_ID:tRNA-His-GTG-1-7
Anticodon:HisGTG
tRNA_number:trna9
Chromosome:15
Strand:-
Coordinate:Start Site(bp): 45490847        End Site(bp): 45490875+1

[8] gtRNAdb_ID:tRNA-His-GTG-1-5
Anticodon:HisGTG
tRNA_number:trna33
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27125906-1        End Site(bp): 27125934

[9] gtRNAdb_ID:tRNA-His-GTG-1-6
Anticodon:HisGTG
tRNA_number:trna7
Chromosome:9
Strand:-
Coordinate:Start Site(bp): 14433981        End Site(bp): 14434009+1



tsRNA Association Statistics

Total Associated Disease Number:20
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D003110 DOID:219
Disease Name:Colonic Neoplasmscolon cancer
Category:MeSHDisease Ontology
Type:Neoplasms//Digestive System Diseasesdisease of anatomical entity//disease of cellular proliferation
Define:Tumors or cancer of the COLON.A colorectal cancer that is located_in the colon.
Alias:Cancer of Colon//Cancer of the Colon//Colon Adenocarcinoma//Colon Cancer//Colon Neoplasms//Colonic Cancer//Neoplasms, ColonicN/A



Disease Association Statistics

Total Associated tsRNA Number:91
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:RT-PCR
Weak Evidence:N/A



Reference

[1] PubMed ID:31173257
Disease Name:Colonic Neoplasms
Tissue:N/A
Dysfunction Pattern:Up-Regulation
Validated Method:RT-PCR
Description:Four DE tRFs (tRF-24-NMEH623K25,tRF-30-XSXMSL73VL4Y,tRF-29-QU7BPN6ISBJO and tRF-27-Q99P9P9NH5N) were significantly upregulated in colon cancer tissue compared with adjacent normal mucosa (Fig. 5B).
Comparision:N/A
Mechanism:N/A