Entry Detail


General Information

Database ID:TRD03417
Confidence:Median
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRNA-GlyGCC
tsRNA Type:tRF-5
Amino acid and Anticodon:GlyGCC
Sequence:GCATTGGTGGTTCAGTGGTAGAATTCTCGC
Related Target:LINC00317;SH3GLB1;GMC1;SNTB1
Predicted Target:FCGR2A//ZG16B//ANAPC2//LPAR1//CLIP1//ZNF592//C9orf129//DPF1//ACAN//PLA2R1
External Links:
MINTbase ID:tRF-30-PNR8YP9LON4V
tRFdb ID:N/A

[1] gtRNAdb_ID:tRNA-Gly-CCC-1-1
Anticodon:GlyCCC
tRNA_number:trna133
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 16872475        End Site(bp): 16872504

[2] gtRNAdb_ID:tRNA-Gly-CCC-1-2
Anticodon:GlyCCC
tRNA_number:trna4
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 17188416        End Site(bp): 17188445

[3] gtRNAdb_ID:tRNA-Gly-GCC-5-1
Anticodon:GlyGCC
tRNA_number:trna18
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 70822597        End Site(bp): 70822626

[4] gtRNAdb_ID:tRNA-Gly-GCC-3-1
Anticodon:GlyGCC
tRNA_number:trna25
Chromosome:16
Strand:-
Coordinate:Start Site(bp): 70812155        End Site(bp): 70812184

[5] gtRNAdb_ID:tRNA-Gly-GCC-2-1
Anticodon:GlyGCC
tRNA_number:trna68
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161493678        End Site(bp): 161493707

[6] gtRNAdb_ID:tRNA-Gly-GCC-2-5
Anticodon:GlyGCC
tRNA_number:trna19
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 70823410        End Site(bp): 70823439

[7] gtRNAdb_ID:tRNA-Gly-GCC-2-4
Anticodon:GlyGCC
tRNA_number:trna24
Chromosome:16
Strand:-
Coordinate:Start Site(bp): 70812983        End Site(bp): 70813012

[8] gtRNAdb_ID:tRNA-Gly-GCC-2-6
Anticodon:GlyGCC
tRNA_number:trna5
Chromosome:17
Strand:+
Coordinate:Start Site(bp): 8029064        End Site(bp): 8029093

[9] gtRNAdb_ID:tRNA-Gly-GCC-2-2
Anticodon:GlyGCC
tRNA_number:trna19
Chromosome:2
Strand:-
Coordinate:Start Site(bp): 157257700        End Site(bp): 157257729

[10] gtRNAdb_ID:tRNA-Gly-GCC-2-3
Anticodon:GlyGCC
tRNA_number:trna128
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27870727        End Site(bp): 27870756



tsRNA Association Statistics

Total Associated Disease Number:4
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D000073605DOID:11103
Disease Name:Spotted Fever Group Rickettsiosisrickettsialpox
Category:MeSHDisease Ontology
Type:Infectionsdisease by infectious agent
Define:A group of arthropod-borne diseases caused by spotted fever bio-group members of RICKETTSIA. They are characterized by fever, headache, and petechial (spotted) rash.A spotted fever that has_material_basis_in Rickettsia akari, which is transmitted_by house mouse mite (Liponyssoides sanguineus) found on mice and other rodents. The infection has_symptom fever, has_symptom chills, has_symptom headache, has_symptom myalgia, and has_symptom papulovesicular rash.
Alias:African Tick-Bite Fever//Far Eastern Spotted Fever//Flinders Island Spotted Fever//Japanese Spotted Fever//North Asian Tick Typhus//Queensland Tick Typhus/Rickettsia aeschlimannii Infection//Rickettsia africae Infection//Rickettsia akari Infection Rickettsia australis Infection//Rickettsia slovaca Infection//Rickettsialpox//Spotted Fever Group Rickettsioses//Spotted Fevers//TIBOLA//Tick-Borne LymphadenopathyRickettsia akari spotted fever //Vesicular rickettsiosis



Disease Association Statistics

Total Associated tsRNA Number:91
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:Northern blot
Weak Evidence:High-throughput sequencing



Reference

[1] PubMed ID:23800282
Disease Name:Spotted Fever Group Rickettsiosis
Tissue:Human Umbilical Vein Endothelial Cells
Dysfunction Pattern:Up-Regulation
Validated Method:Northern blot//High-throughput sequencing
Description:Data Mining predicted that these tRFs may interact with transcripts associated with the endothelial barrier, the host cell inflammatory response, and autophagy.
Comparision:Infect VS Control
Mechanism:N/A