Entry Detail


General Information

Database ID:TRD02698
Confidence:Median
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-16-884U1DD
tsRNA Type:tRF-3
Amino acid and Anticodon:TyrGTA
Sequence:TCCGGCTCGAAGGACC
Related Target:N/A
Predicted Target:CHST3//KLHDC4//CHD2//GAD2//KIFC3//ATAD1//TMEM41A//MST1//CCDC106//OR2M4
External Links:
MINTbase ID:tRF-16-884U1DD
tRFdb ID:tRNA-Tyr-GTA-5-3

[1] gtRNAdb_ID:tRNA-Tyr-GTA-5-3
Anticodon:TyrGTA
tRNA_number:trna19
Chromosome:14
Strand:-
Coordinate:Start Site(bp): 21121258-2        End Site(bp): 21121271

[2] gtRNAdb_ID:tRNA-Tyr-GTA-7-1
Anticodon:TyrGTA
tRNA_number:trna17
Chromosome:14
Strand:-
Coordinate:Start Site(bp): 21128117-2        End Site(bp): 21128130

[3] gtRNAdb_ID:tRNA-Tyr-GTA-5-4
Anticodon:TyrGTA
tRNA_number:trna16
Chromosome:14
Strand:-
Coordinate:Start Site(bp): 21131351-2        End Site(bp): 21131364

[4] gtRNAdb_ID:tRNA-Tyr-GTA-5-5
Anticodon:TyrGTA
tRNA_number:trna5
Chromosome:14
Strand:+
Coordinate:Start Site(bp): 21151507        End Site(bp): 21151520+2

[5] gtRNAdb_ID:tRNA-Tyr-GTA-1-1
Anticodon:TyrGTA
tRNA_number:trna14
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 26569163        End Site(bp): 26569176+2

[6] gtRNAdb_ID:tRNA-Tyr-GTA-8-1
Anticodon:TyrGTA
tRNA_number:trna15
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 26575874        End Site(bp): 26575887+2

[7] gtRNAdb_ID:tRNA-Tyr-GTA-2-1
Anticodon:TyrGTA
tRNA_number:trna2
Chromosome:2
Strand:+
Coordinate:Start Site(bp): 27273725        End Site(bp): 27273738+2

[8] gtRNAdb_ID:tRNA-Tyr-GTA-5-1
Anticodon:TyrGTA
tRNA_number:trna4
Chromosome:8
Strand:+
Coordinate:Start Site(bp): 67025681        End Site(bp): 67025694+2

[9] gtRNAdb_ID:tRNA-Tyr-GTA-5-2
Anticodon:TyrGTA
tRNA_number:trna5
Chromosome:8
Strand:+
Coordinate:Start Site(bp): 67026298        End Site(bp): 67026311+2



tsRNA Association Statistics

Total Associated Disease Number:1
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D000077195DOID:5520
Disease Name:Squamous Cell Carcinoma of Head and Neckhead and neck squamous cell carcinom
Category:MeSHDisease Ontology
Type:Neoplasmsdisease of cellular proliferation
Define:The most common type of head and neck carcinoma that originates from cells on the surface of the NASAL CAVITY; MOUTH; PARANASAL SINUSES, SALIVARY GLANDS, and LARYNX. Mutations in TNFRSF10B, PTEN, and ING1 genes are associated with this cancer.A head and neck carcinoma that has_material_basis_in squamous cells that line the moist, mucosal surfaces inside the head and neck.
Alias:Carcinoma, Squamous Cell of Head and Neck//HNSCC//Head And Neck Squamous Cell Carcinomas//Head and Neck Squamous Cell Carcinoma//Hypopharyngeal Squamous Cell Carcinoma//Laryngeal Squamous Cell Carcinoma//Oral Cavity Squamous Cell Carcinoma//Oral Squamous Cell Carcinoma//Oral Squamous Cell Carcinomas//Oral Tongue Squamous Cell Carcinoma//Oropharyngeal Squamous Cell Carcinoma//Squamous Cell Carcinoma of Larynx//Squamous Cell Carcinoma of the Head and Neck//Squamous Cell Carcinoma of the Larynx//Squamous Cell Carcinoma of the Mouth//Squamous Cell Carcinoma of the Nasal Cavity//Squamous Cell Carcinoma, Head And Neckcarcinoma of the head and neck//squamous cell carcinoma of the head and neck//squamous cell carcinomas of head and neck



Disease Association Statistics

Total Associated tsRNA Number:38
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:N/A
Weak Evidence:High-throughput sequencing//Data Mining



Reference

[1] PubMed ID:33202812
Disease Name:Squamous Cell Carcinoma of Head and Neck
Tissue:N/A
Dysfunction Pattern:N/A
Validated Method:High-throughput sequencing//Data Mining
Description:Fifteen tRFs were found to be significantly associated with overall survival (Kaplan-Meier survival analysis,log rank test p-value<00.01).
Comparision:N/A
Mechanism:N/A