Entry Detail


General Information

Database ID:TRD02557
Confidence:Low
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:3b_tRF-Pro-TGG/AGG/CGG
tsRNA Type:tRF-3
Amino acid and Anticodon:ProTGG;ProAGG;ProCGG
Sequence:TCAAATCCCGGACGAGCCCCCA
Related Target:N/A
Predicted Target:PLPPR5//CILP2//SLC4A3//TAF5L//MXRA5//PTPRB//ZBED1//ITGB2//MLST8//ST3GAL1
External Links:
MINTbase ID:tRF-22-8B8SOUPR2
tRFdb ID:tRFdb-3002b

[1] gtRNAdb_ID:tRNA-Pro-AGG-2-1
Anticodon:ProAGG
tRNA_number:trna65
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 167684725-3        End Site(bp): 167684743

[2] gtRNAdb_ID:tRNA-Pro-AGG-2-4
Anticodon:ProAGG
tRNA_number:trna9
Chromosome:11
Strand:+
Coordinate:Start Site(bp): 75946610        End Site(bp): 75946628+3

[3] gtRNAdb_ID:tRNA-Pro-AGG-2-6
Anticodon:ProAGG
tRNA_number:trna22
Chromosome:14
Strand:-
Coordinate:Start Site(bp): 21081560-3        End Site(bp): 21081578

[4] gtRNAdb_ID:tRNA-Pro-AGG-2-5
Anticodon:ProAGG
tRNA_number:trna23
Chromosome:14
Strand:-
Coordinate:Start Site(bp): 21077495-3        End Site(bp): 21077513

[5] gtRNAdb_ID:tRNA-Pro-AGG-2-7
Anticodon:ProAGG
tRNA_number:trna29
Chromosome:16
Strand:-
Coordinate:Start Site(bp): 3232635-3        End Site(bp): 3232653

[6] gtRNAdb_ID:tRNA-Pro-AGG-2-8
Anticodon:ProAGG
tRNA_number:trna9
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 3239687        End Site(bp): 3239705+3

[7] gtRNAdb_ID:tRNA-Pro-AGG-2-2
Anticodon:ProAGG
tRNA_number:trna12
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 26555551        End Site(bp): 26555569+3

[8] gtRNAdb_ID:tRNA-Pro-AGG-2-3
Anticodon:ProAGG
tRNA_number:trna2
Chromosome:7
Strand:+
Coordinate:Start Site(bp): 128423557        End Site(bp): 128423575+3

[9] gtRNAdb_ID:tRNA-Pro-AGG-1-1
Anticodon:ProAGG
tRNA_number:trna11
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 3242042        End Site(bp): 3242060+3

[10] gtRNAdb_ID:tRNA-Pro-CGG-2-1
Anticodon:ProCGG
tRNA_number:trna30
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27059574        End Site(bp): 27059592+3

[11] gtRNAdb_ID:tRNA-Pro-CGG-1-1
Anticodon:ProCGG
tRNA_number:trna52
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 167684015        End Site(bp): 167684033+3

[12] gtRNAdb_ID:tRNA-Pro-CGG-1-2
Anticodon:ProCGG
tRNA_number:trna6
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 3222102        End Site(bp): 3222120+3

[13] gtRNAdb_ID:tRNA-Pro-CGG-1-3
Anticodon:ProCGG
tRNA_number:trna37
Chromosome:17
Strand:-
Coordinate:Start Site(bp): 8126151-3        End Site(bp): 8126169

[14] gtRNAdb_ID:tRNA-Pro-TGG-3-2
Anticodon:ProTGG
tRNA_number:trna6
Chromosome:14
Strand:+
Coordinate:Start Site(bp): 21152228        End Site(bp): 21152246+3

[15] gtRNAdb_ID:tRNA-Pro-TGG-3-4
Anticodon:ProTGG
tRNA_number:trna28
Chromosome:16
Strand:-
Coordinate:Start Site(bp): 3234133-3        End Site(bp): 3234151

[16] gtRNAdb_ID:tRNA-Pro-TGG-3-3
Anticodon:ProTGG
tRNA_number:trna3
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 3208976        End Site(bp): 3208994+3

[17] gtRNAdb_ID:tRNA-Pro-TGG-3-5
Anticodon:ProTGG
tRNA_number:trna8
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 3238147        End Site(bp): 3238165+3

[18] gtRNAdb_ID:tRNA-Pro-TGG-3-1
Anticodon:ProTGG
tRNA_number:trna14
Chromosome:5
Strand:-
Coordinate:Start Site(bp): 180615854-3        End Site(bp): 180615872

[19] gtRNAdb_ID:tRNA-Pro-TGG-2-1
Anticodon:ProTGG
tRNA_number:trna12
Chromosome:11
Strand:-
Coordinate:Start Site(bp): 75946869-3        End Site(bp): 75946887

[20] gtRNAdb_ID:tRNA-Pro-TGG-1-1
Anticodon:ProTGG
tRNA_number:trna3
Chromosome:14
Strand:+
Coordinate:Start Site(bp): 21101218        End Site(bp): 21101236+3

[21] gtRNAdb_ID:tRNA-Pro-AGG-3-1
Anticodon:ProAGG
tRNA_number:trna4
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 3210462        End Site(bp): 3210480+3



tsRNA Association Statistics

Total Associated Disease Number:2
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D002289DOID:3908
Disease Name:Carcinoma, Non-Small-Cell Lunglung non-small cell carcinoma
Category:MeSHDisease Ontology
Type:Neoplasms//Respiratory Tract Diseasesdisease of anatomical entity//disease of cellular proliferation
Define:A heterogeneous aggregate of at least three distinct histological types of lung cancer, including SQUAMOUS CELL CARCINOMA; ADENOCARCINOMA; and LARGE CELL CARCINOMA. They are dealt with collectively because of their shared treatment strategy.A lung carcinoma that is characterized as any type of epithelial lung cancer other than small cell lung carcinoma.
Alias:Carcinoma, Non-Small Cell Lung//Non-Small Cell Lung Cancer//Non-Small Cell Lung Carcinoma//Non-Small-Cell Lung Carcinoma//Nonsmall Cell Lung CancerNon-small cell lung cancer//non-small cell lung carcinoma//NSCLC



Disease Association Statistics

Total Associated tsRNA Number:132
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:N/A
Weak Evidence:Data Mining



Reference

[1] PubMed ID:35892120
Disease Name:Carcinoma, Non-Small-Cell Lung
Tissue:Lung
Dysfunction Pattern:Up-Regulation
Validated Method:Data Mining
Description:Due to the different data platforms, GEO and TCGA were separately calculated. We used Deseq2 and t test in two GEO datasets (GEO: GSE83527 and GEO: GSE62812) and TCGA-LUAD cohort based on both raw read counts and normalized expression profile transcripts per million mapped reads (TPM), respectively.
Comparision:Cancer VS Normal
Mechanism:N/A