Entry Detail


General Information

Database ID:TRD02183
Confidence:Low
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:3a_tRF-Glu-TTC/CTC
tsRNA Type:tRF-3
Amino acid and Anticodon:GluTTC;GluCTC
Sequence:TTCCCGGTCAGGGAACCA
Related Target:N/A
Predicted Target:MYOCOS//PXDNL//C17orf80//RNF213//MID1//SCAF4//FBP2//OR7A5//CHST3//OSBP2
External Links:
MINTbase ID:tRF-18-YRR6RBD2
tRFdb ID:tRFdb-3029a

[1] gtRNAdb_ID:tRNA-Glu-CTC-12-1
Anticodon:GluCTC
tRNA_number:trna10
Chromosome:3
Strand:-
Coordinate:Start Site(bp): 103879524-3        End Site(bp): 103879538

[2] gtRNAdb_ID:tRNA-Glu-CTC-7-1
Anticodon:GluCTC
tRNA_number:trna18
Chromosome:2
Strand:-
Coordinate:Start Site(bp): 159738171-3        End Site(bp): 159738185

[3] gtRNAdb_ID:tRNA-Phe-GAA-10-1
Anticodon:PheGAA
tRNA_number:trna92
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 149672905-3        End Site(bp): 149672919

[4] gtRNAdb_ID:tRNA-Phe-GAA-9-1
Anticodon:PheGAA
tRNA_number:trna100
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 149287359-3        End Site(bp): 149287373

[5] gtRNAdb_ID:tRNA-Glu-TTC-7-1
Anticodon:GluTTC
tRNA_number:trna105
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 149161628-3        End Site(bp): 149161642

[6] gtRNAdb_ID:tRNA-Glu-CTC-6-1
Anticodon:GluCTC
tRNA_number:trna1
Chromosome:18
Strand:+
Coordinate:Start Site(bp): 43299808        End Site(bp): 43299822+3

[7] gtRNAdb_ID:tRNA-Glu-CTC-3-1
Anticodon:GluCTC
tRNA_number:trna4
Chromosome:13
Strand:-
Coordinate:Start Site(bp): 42030061-3        End Site(bp): 42030075

[8] gtRNAdb_ID:tRNA-Glu-CTC-1-1
Anticodon:GluCTC
tRNA_number:trna116
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 145399233-3        End Site(bp): 145399247

[9] gtRNAdb_ID:tRNA-Glu-CTC-1-5
Anticodon:GluCTC
tRNA_number:trna71
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161439189-3        End Site(bp): 161439203

[10] gtRNAdb_ID:tRNA-Glu-CTC-1-4
Anticodon:GluCTC
tRNA_number:trna74
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161431809-3        End Site(bp): 161431823

[11] gtRNAdb_ID:tRNA-Glu-CTC-1-3
Anticodon:GluCTC
tRNA_number:trna77
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161424398-3        End Site(bp): 161424412

[12] gtRNAdb_ID:tRNA-Glu-CTC-1-2
Anticodon:GluCTC
tRNA_number:trna80
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161417018-3        End Site(bp): 161417032

[13] gtRNAdb_ID:tRNA-Glu-CTC-1-6
Anticodon:GluCTC
tRNA_number:trna77
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 28950033        End Site(bp): 28950047+3

[14] gtRNAdb_ID:tRNA-Glu-CTC-1-7
Anticodon:GluCTC
tRNA_number:trna87
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 126101393-3        End Site(bp): 126101407

[15] gtRNAdb_ID:tRNA-Glu-TTC-4-1
Anticodon:GluTTC
tRNA_number:trna134
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 16861774-3        End Site(bp): 16861788

[16] gtRNAdb_ID:tRNA-Glu-TTC-4-2
Anticodon:GluTTC
tRNA_number:trna84
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161391883-3        End Site(bp): 161391897



tsRNA Association Statistics

Total Associated Disease Number:4
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D002289DOID:3908
Disease Name:Carcinoma, Non-Small-Cell Lunglung non-small cell carcinoma
Category:MeSHDisease Ontology
Type:Neoplasms//Respiratory Tract Diseasesdisease of anatomical entity//disease of cellular proliferation
Define:A heterogeneous aggregate of at least three distinct histological types of lung cancer, including SQUAMOUS CELL CARCINOMA; ADENOCARCINOMA; and LARGE CELL CARCINOMA. They are dealt with collectively because of their shared treatment strategy.A lung carcinoma that is characterized as any type of epithelial lung cancer other than small cell lung carcinoma.
Alias:Carcinoma, Non-Small Cell Lung//Non-Small Cell Lung Cancer//Non-Small Cell Lung Carcinoma//Non-Small-Cell Lung Carcinoma//Nonsmall Cell Lung CancerNon-small cell lung cancer//non-small cell lung carcinoma//NSCLC



Disease Association Statistics

Total Associated tsRNA Number:132
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:N/A
Weak Evidence:Data Mining



Reference

[1] PubMed ID:35892120
Disease Name:Carcinoma, Non-Small-Cell Lung
Tissue:Lung
Dysfunction Pattern:Up-Regulation
Validated Method:Data Mining
Description:Due to the different data platforms, GEO and TCGA were separately calculated. We used Deseq2 and t test in two GEO datasets (GEO: GSE83527 and GEO: GSE62812) and TCGA-LUAD cohort based on both raw read counts and normalized expression profile transcripts per million mapped reads (TPM), respectively.
Comparision:Cancer VS Normal
Mechanism:N/A