Entry Detail


General Information

Database ID:TRD00991
Confidence:High
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-17-VBY9PYJ
tsRNA Type:i-tRF
Amino acid and Anticodon:GlyGCC
Sequence:TAGAATTCTCGCCTGCC
Related Target:N/A
Predicted Target:FCGR2A//CTBS//ZNF668//CENPB//SOX11//TMEM132B//NRP2//TRARG1//IQSEC2//IFI30
External Links:
MINTbase ID:tRF-17-VBY9PYJ
tRFdb ID:tRNA-Gly-GCC-5-1

[1] gtRNAdb_ID:tRNA-Gly-GCC-5-1
Anticodon:GlyGCC
tRNA_number:trna18
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 70822615        End Site(bp): 70822631

[2] gtRNAdb_ID:tRNA-Gly-GCC-3-1
Anticodon:GlyGCC
tRNA_number:trna25
Chromosome:16
Strand:-
Coordinate:Start Site(bp): 70812150        End Site(bp): 70812166

[3] gtRNAdb_ID:tRNA-Gly-GCC-2-1
Anticodon:GlyGCC
tRNA_number:trna68
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161493673        End Site(bp): 161493689

[4] gtRNAdb_ID:tRNA-Gly-GCC-2-5
Anticodon:GlyGCC
tRNA_number:trna19
Chromosome:16
Strand:+
Coordinate:Start Site(bp): 70823428        End Site(bp): 70823444

[5] gtRNAdb_ID:tRNA-Gly-GCC-2-4
Anticodon:GlyGCC
tRNA_number:trna24
Chromosome:16
Strand:-
Coordinate:Start Site(bp): 70812978        End Site(bp): 70812994

[6] gtRNAdb_ID:tRNA-Gly-GCC-2-6
Anticodon:GlyGCC
tRNA_number:trna5
Chromosome:17
Strand:+
Coordinate:Start Site(bp): 8029082        End Site(bp): 8029098

[7] gtRNAdb_ID:tRNA-Gly-GCC-2-2
Anticodon:GlyGCC
tRNA_number:trna19
Chromosome:2
Strand:-
Coordinate:Start Site(bp): 157257695        End Site(bp): 157257711

[8] gtRNAdb_ID:tRNA-Gly-GCC-2-3
Anticodon:GlyGCC
tRNA_number:trna128
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27870722        End Site(bp): 27870738

[9] gtRNAdb_ID:tRNA-Gly-GCC-1-1
Anticodon:GlyGCC
tRNA_number:trna35
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161413112        End Site(bp): 161413128

[10] gtRNAdb_ID:tRNA-Gly-GCC-1-2
Anticodon:GlyGCC
tRNA_number:trna37
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161420485        End Site(bp): 161420501

[11] gtRNAdb_ID:tRNA-Gly-GCC-1-3
Anticodon:GlyGCC
tRNA_number:trna39
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161427916        End Site(bp): 161427932

[12] gtRNAdb_ID:tRNA-Gly-GCC-1-4
Anticodon:GlyGCC
tRNA_number:trna41
Chromosome:1
Strand:+
Coordinate:Start Site(bp): 161435276        End Site(bp): 161435292

[13] gtRNAdb_ID:tRNA-Gly-GCC-1-5
Anticodon:GlyGCC
tRNA_number:trna2
Chromosome:21
Strand:-
Coordinate:Start Site(bp): 18827143        End Site(bp): 18827159



tsRNA Association Statistics

Total Associated Disease Number:12
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D000077273DOID:3969
Disease Name:Thyroid Cancer, Papillarythyroid gland papillary carcinoma
Category:MeSHDisease Ontology
Type:Neoplasms//Endocrine System Diseasesdisease of anatomical entity//disease of cellular proliferation
Define:An ADENOCARCINOMA that originates from follicular cells of the THYROID GLAND and accounts for the majority of THYROID CANCER cases. Cells exhibit enlarged, oval, or elongated morphologies with clear, round, nuclei. Fusions of RET, NTRK1, TPM3, and PCM1 genes are associated with this cancer.A differentiated thyroid gland carcinoma that is characterized by the small mushroom shape of the tumor which has a stem attached to the epithelial layer and arises from the follicular cells of the thyroid gland.
Alias:Familial Nonmedullary Thyroid Cancer//Nonmedullary Thyroid Carcinoma//Papillary Carcinoma Of Thyroid//Papillary Thyroid Carcinoma//Thyroid Carcinoma, PapillaryPapillary carcinoma of the Thyroid gland



Disease Association Statistics

Total Associated tsRNA Number:61
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:PCR
Weak Evidence:High-throughput sequencing



Reference

[1] PubMed ID:33332661
Disease Name:Thyroid Cancer, Papillary
Tissue:N/A
Dysfunction Pattern:Up-Regulation
Validated Method:PCR//High-throughput sequencing
Description:The 10 most upregulated tRFs and tsRNAs were tRF-39-I6D3887S1RMH5MI2,tRF-21-2E489B3RB,tRF-18-JMRPFQDY,tRF-17-202L2YF,tRF-17-VBY9PYJ,tRF-18-YRRHQFD2,tRF-21-WE884U1DD,tRF-41-EX2Z10I9BZBZOS4YB,tRF-39-HPDEXK7S1RNS9MI2,and tRF-20-1SS2P46I.
Comparision:N/A
Mechanism:N/A