Entry Detail



General Information

Database ID:TRD00595
Confidence:High
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-30-JZOYJE22RR33
tsRNA Type:i-tRF
Amino acid and Anticodon:CysGCA
Sequence:CATTTGACTGCAGATCAAGAGGTCCCCGGT
Related Target:N/A
Predicted Target:FAM135A//CDH6//DSCAM//LRIG3//MUC5AC//ZNF517//DLL1//C12orf74//MGA//PRR29
External Links:
MINTbase ID:tRF-30-JZOYJE22RR33
tRFdb ID:tRNA-Cys-GCA-25-1

[1] gtRNAdb_ID:tRNA-Cys-GCA-25-1
Anticodon:CysGCA
tRNA_number:trna12
Chromosome:3
Strand:-
Coordinate:Start Site(bp): 17741411        End Site(bp): 17741440

[2] gtRNAdb_ID:tRNA-Cys-GCA-24-1
Anticodon:CysGCA
tRNA_number:trna30
Chromosome:17
Strand:-
Coordinate:Start Site(bp): 36989994        End Site(bp): 36990023

[3] gtRNAdb_ID:tRNA-Cys-GCA-23-1
Anticodon:CysGCA
tRNA_number:trna19
Chromosome:7
Strand:-
Coordinate:Start Site(bp): 149292324        End Site(bp): 149292353

[4] gtRNAdb_ID:tRNA-Cys-GCA-21-1
Anticodon:CysGCA
tRNA_number:trna14
Chromosome:7
Strand:+
Coordinate:Start Site(bp): 149361938        End Site(bp): 149361967

[5] gtRNAdb_ID:tRNA-Cys-GCA-17-1
Anticodon:CysGCA
tRNA_number:trna16
Chromosome:7
Strand:-
Coordinate:Start Site(bp): 149388291        End Site(bp): 149388320

[6] gtRNAdb_ID:tRNA-Cys-GCA-11-1
Anticodon:CysGCA
tRNA_number:trna21
Chromosome:7
Strand:-
Coordinate:Start Site(bp): 149112248        End Site(bp): 149112277

[7] gtRNAdb_ID:tRNA-Cys-GCA-8-1
Anticodon:CysGCA
tRNA_number:trna8
Chromosome:14
Strand:+
Coordinate:Start Site(bp): 73429702        End Site(bp): 73429731

[8] gtRNAdb_ID:tRNA-Cys-GCA-7-1
Anticodon:CysGCA
tRNA_number:trna127
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 93981853        End Site(bp): 93981882

[9] gtRNAdb_ID:tRNA-Cys-GCA-5-1
Anticodon:CysGCA
tRNA_number:trna3
Chromosome:15
Strand:+
Coordinate:Start Site(bp): 80037021        End Site(bp): 80037050

[10] gtRNAdb_ID:tRNA-Cys-GCA-2-2
Anticodon:CysGCA
tRNA_number:trna15
Chromosome:17
Strand:+
Coordinate:Start Site(bp): 37023921        End Site(bp): 37023950

[11] gtRNAdb_ID:tRNA-Cys-GCA-2-4
Anticodon:CysGCA
tRNA_number:trna26
Chromosome:17
Strand:-
Coordinate:Start Site(bp): 37310763        End Site(bp): 37310792

[12] gtRNAdb_ID:tRNA-Cys-GCA-2-3
Anticodon:CysGCA
tRNA_number:trna27
Chromosome:17
Strand:-
Coordinate:Start Site(bp): 37310006        End Site(bp): 37310035

[13] gtRNAdb_ID:tRNA-Cys-GCA-2-1
Anticodon:CysGCA
tRNA_number:trna3
Chromosome:4
Strand:-
Coordinate:Start Site(bp): 124430024        End Site(bp): 124430053



tsRNA Association Statistics

Total Associated Disease Number:1
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D001943DOID:1612
Disease Name:Breast Neoplasmsbreast cancer
Category:MeSHDisease Ontology
Type:Neoplasms//Skin and Connective Tissue Diseasesdisease of anatomical entity//disease of cellular proliferation
Define:Tumors or cancer of the human BREAST.A thoracic cancer that originates in the mammary gland.
Alias:Breast Cancer//Breast Carcinoma//Breast Tumors//Cancer of Breast//Cancer of the Breast//Human Mammary Carcinoma//Malignant Neoplasm of Breast//Malignant Tumor of Breast//Mammary Cancer//Mammary Carcinoma, Human//Mammary Neoplasm, Human//Mammary Neoplasms, Human//Neoplasms, Breast//Tumors, Breastbreast tumor//malignant neoplasm of breast//malignant tumor of the breast//mammary cancer//mammary neoplasm//mammary tumor//primary breast cancer



Disease Association Statistics

Total Associated tsRNA Number:549
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:RT-PCR
Weak Evidence:High-throughput sequencing//Data Mining



Reference

[1] PubMed ID:30153663
Disease Name:Breast Neoplasms
Tissue:N/A
Dysfunction Pattern:Up-Regulation
Validated Method:RT-PCR//High-throughput sequencing//Data Mining
Description:Our sequence results showed that tRNA-derived fragments were differentially expressed in the HBL-100,SKBR3,and JIMT-1 cell lines.
Comparision:N/A
Mechanism:N/A