Entry Detail


General Information

Database ID:TRD00502
Confidence:High
Contents:>> tsRNA Information
>> tsRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference



tsRNA Information

tsRNA Name:tRF-24-NMEH623K25
tsRNA Type:i-tRF
Amino acid and Anticodon:AspGTC
Sequence:CTGTCACGCGGGAGACCGGGGTTC
Related Target:N/A
Predicted Target:FCGR2A//LTBP3//SARM1//KRT5//HOMER3//SIK3//FAHD2A//SKI//ABR//ZNF777
External Links:
MINTbase ID:tRF-24-NMEH623K25
tRFdb ID:tRNA-Asp-GTC-4-1

[1] gtRNAdb_ID:tRNA-Asp-GTC-4-1
Anticodon:AspGTC
tRNA_number:trna6
Chromosome:9
Strand:-
Coordinate:Start Site(bp): 77518007        End Site(bp): 77518030

[2] gtRNAdb_ID:tRNA-Asp-GTC-3-1
Anticodon:AspGTC
tRNA_number:trna144
Chromosome:6
Strand:-
Coordinate:Start Site(bp): 27551253        End Site(bp): 27551276

[3] gtRNAdb_ID:tRNA-Asp-GTC-2-5
Anticodon:AspGTC
tRNA_number:trna69
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161440222        End Site(bp): 161440245

[4] gtRNAdb_ID:tRNA-Asp-GTC-2-4
Anticodon:AspGTC
tRNA_number:trna72
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161432841        End Site(bp): 161432864

[5] gtRNAdb_ID:tRNA-Asp-GTC-2-3
Anticodon:AspGTC
tRNA_number:trna75
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161425431        End Site(bp): 161425454

[6] gtRNAdb_ID:tRNA-Asp-GTC-2-2
Anticodon:AspGTC
tRNA_number:trna78
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161418050        End Site(bp): 161418073

[7] gtRNAdb_ID:tRNA-Asp-GTC-2-1
Anticodon:AspGTC
tRNA_number:trna81
Chromosome:1
Strand:-
Coordinate:Start Site(bp): 161410632        End Site(bp): 161410655

[8] gtRNAdb_ID:tRNA-Asp-GTC-2-10
Anticodon:AspGTC
tRNA_number:trna10
Chromosome:12
Strand:-
Coordinate:Start Site(bp): 125424210        End Site(bp): 125424233

[9] gtRNAdb_ID:tRNA-Asp-GTC-2-9
Anticodon:AspGTC
tRNA_number:trna12
Chromosome:12
Strand:-
Coordinate:Start Site(bp): 125411908        End Site(bp): 125411931

[10] gtRNAdb_ID:tRNA-Asp-GTC-2-8
Anticodon:AspGTC
tRNA_number:trna4
Chromosome:12
Strand:+
Coordinate:Start Site(bp): 96429830        End Site(bp): 96429853

[11] gtRNAdb_ID:tRNA-Asp-GTC-2-11
Anticodon:AspGTC
tRNA_number:trna38
Chromosome:17
Strand:-
Coordinate:Start Site(bp): 8125573        End Site(bp): 8125596

[12] gtRNAdb_ID:tRNA-Asp-GTC-2-6
Anticodon:AspGTC
tRNA_number:trna45
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27447484        End Site(bp): 27447507

[13] gtRNAdb_ID:tRNA-Asp-GTC-2-7
Anticodon:AspGTC
tRNA_number:trna48
Chromosome:6
Strand:+
Coordinate:Start Site(bp): 27471554        End Site(bp): 27471577

[14] gtRNAdb_ID:tRNA-Asp-GTC-1-1
Anticodon:AspGTC
tRNA_number:trna5
Chromosome:12
Strand:+
Coordinate:Start Site(bp): 98897312        End Site(bp): 98897335



tsRNA Association Statistics

Total Associated Disease Number:2
More Information
Network:
(Display the first 15 nodes)



Disease Information

 MeSHDisease Ontology
Disease ID:D003110 DOID:219
Disease Name:Colonic Neoplasmscolon cancer
Category:MeSHDisease Ontology
Type:Neoplasms//Digestive System Diseasesdisease of anatomical entity//disease of cellular proliferation
Define:Tumors or cancer of the COLON.A colorectal cancer that is located_in the colon.
Alias:Cancer of Colon//Cancer of the Colon//Colon Adenocarcinoma//Colon Cancer//Colon Neoplasms//Colonic Cancer//Neoplasms, ColonicN/A



Disease Association Statistics

Total Associated tsRNA Number:91
More Information
Network:
(Display the first 15 nodes)



Evidence Support

Strong Evidence:RT-PCR
Weak Evidence:N/A



Reference

[1] PubMed ID:31173257
Disease Name:Colonic Neoplasms
Tissue:N/A
Dysfunction Pattern:Up-Regulation
Validated Method:RT-PCR
Description:Four DE tRFs (tRF-24-NMEH623K25,tRF-30-XSXMSL73VL4Y,tRF-29-QU7BPN6ISBJO and tRF-27-Q99P9P9NH5N) were significantly upregulated in colon cancer tissue compared with adjacent normal mucosa (Fig. 5B).
Comparision:N/A
Mechanism:N/A